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Group: microbiology_nijmegen - library [522 articles]

Recent papers posted by members of the microbiology_nijmegen group
  • Arsenic(III) Fuels Anoxygenic Photosynthesis in Hot Spring Biofilms from Mono Lake, California
    Science, Vol. 321, No. 5891. (15 August 2008), pp. 967-970.
    by TR Kulp, SE Hoeft, M Asao, MT Madigan, JT Hollibaugh, JC Fisher, JF Stolz, CW Culbertson, LG Miller, RS Oremland
    posted to phototrophy novel_guilds anaerobic by Katje to the group microbiology_nijmegen on 2008-08-18 15:52:41 as **
  • Effects of soil warming and drying on methane cycling in a northern peatland mesocosm study
    Journal of Geophysical Research, Vol. 113 (26 July 2008), G00A06.
    by Jeffrey R White, Robert D Shannon, Jake F Weltzin, John Pastor, Scott D Bridgham
    posted to peat methane by Huub_odc to the group microbiology_nijmegen on 2008-08-15 15:39:16 as **
  • Assessment of the positive effect of salinity on the nitrogen removal performance and microbial composition during the start-up of CANON process
    Applied Microbiology and Biotechnology, Vol. 80, No. 2. (2008), pp. 339-348.
    by Sitong Liu, Fenglin Yang, Zheng Gong, Zhencheng Su
    posted to nitrification anammox by Huub_odc to the group microbiology_nijmegen on 2008-08-15 09:56:30 as **
  • Diurnal redox fluctuation and microbial activity in the rhizosphere of wetland plants
    European Journal of Soil Biology, Vol. 44, No. 3. ( 2008), pp. 324-333.
    by Marcell Nikolausz, Uwe Kappelmeyer, Anna Székely, Anna Rusznyák, Károly Márialigeti, Matthias Kästner
    posted to soil rhizosphere amo by Huub_odc to the group microbiology_nijmegen on 2008-08-15 08:58:00 as **
  • Real-time detection of actively metabolizing microbes by redox sensing as applied to methylotroph populations in Lake Washington
    ISME J, Vol. 2, No. 7. (27 March 2008), pp. 696-706.
    by Marina G Kalyuzhnaya, Mary E Lidstrom, Ludmila Chistoserdova
    posted to methylotrophy methane by Huub_odc to the group microbiology_nijmegen on 2008-08-15 08:47:16 as ** along with 1 person ax
  • Diversity and spatial distribution of sediment ammonia-oxidizing crenarchaeota in response to estuarine and environmental gradients in the Changjiang Estuary and East China Sea
    Microbiology, Vol. 154, No. 7. (1 July 2008), pp. 2084-2095.
    by Hongyue Dang, Xiaoxia Zhang, Jin Sun, Tiegang Li, Zhinan Zhang, Guanpin Yang
    posted to crenarchaea amo by Huub_odc to the group microbiology_nijmegen on 2008-08-15 08:28:45 as **
  • Methanogenic archaea: ecologically relevant differences in energy conservation
    Nature Reviews Microbiology, Vol. 6, No. 8. (30 June 2008), pp. 579-591.
    by Rudolf K Thauer, Anne-Kristin Kaster, Henning Seedorf, Wolfgang Buckel, Reiner Hedderich
    posted to review methane cytochrome by Huub_odc to the group microbiology_nijmegen on 2008-08-15 08:14:52 as **
  • Structure of an F430 variant from archaea associated with anaerobic oxidation of methane.
    Journal of the American Chemical Society, Vol. 130, No. 32. (13 August 2008), pp. 10758-10767.
    by S Mayr, C Latkoczy, M Krüger, D Günther, S Shima, RK Thauer, F Widdel, B Jaun
    posted to biochemistry anme by faluesken to the group microbiology_nijmegen on 2008-08-14 14:10:58 as **
  • A thermodynamic analysis of the anaerobic oxidation of methane in marine sediments.
    Geobiology (11 August 2008)
    by D E E Larowe, A W W Dale, P Regnier
    posted to anme by faluesken to the group microbiology_nijmegen on 2008-08-14 14:10:01 as *****
  • Microbial reefs in the Black Sea fueled by anaerobic oxidation of methane.
    Science (New York, N.Y.), Vol. 297, No. 5583. (9 August 2002), pp. 1013-1015.
    by W Michaelis, R Seifert, K Nauhaus, T Treude, V Thiel, M Blumenberg, K Knittel, A Gieseke, K Peterknecht, T Pape, A Boetius, R Amann, BB Jørgensen, F Widdel, J Peckmann, NV Pimenov, MB Gulin
    posted to geochemistry ecology anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 12:02:28 as **
  • Diversity and distribution of methanotrophic archaea at cold seeps.
    Applied and environmental microbiology, Vol. 71, No. 1. (January 2005), pp. 467-479.
    by K Knittel, T Lösekann, A Boetius, R Kort, R Amann
    posted to ecology anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 12:02:03 as **
  • Microbial community in a sediment-hosted CO2 lake of the southern Okinawa Trough hydrothermal system.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 38. (19 September 2006), pp. 14164-14169.
    by F Inagaki, MM Kuypers, U Tsunogai, J Ishibashi, K Nakamura, T Treude, S Ohkubo, M Nakaseama, K Gena, H Chiba, H Hirayama, T Nunoura, K Takai, BB Jørgensen, K Horikoshi, A Boetius
    posted to geochemistry ecology anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 12:01:19 as **
  • Novel microbial communities of the Haakon Mosby mud volcano and their role as a methane sink
    Nature, Vol. 443, No. 7113., pp. 854-858.
    by Helge Niemann, Tina Lösekann, Dirk de Beer, Marcus Elvert, Thierry Nadalig, Katrin Knittel, Rudolf Amann, Eberhard J Sauter, Michael Schlüter, Michael Klages, Jean P Foucher, Antje Boetius
    posted to geochemistry ecology anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 12:00:54 as **
  • In vitro cell growth of marine archaeal-bacterial consortia during anaerobic oxidation of methane with sulfate
    Environmental Microbiology, Vol. 9, No. 1. (January 2007), pp. 187-196.
    by Nauhaus, Katja, Albrecht, Melanie, Elvert, Marcus, Boetius, Antje, Widdel, Friedrich
    posted to physiology anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:59:29 as **
  • Consumption of methane and CO2 by methanotrophic microbial mats from gas seeps of the anoxic Black Sea
    Appl. Environ. Microbiol., Vol. 73, No. 7. (2007), pp. 2271-2283.
    by T Treude, V Orphan, K Knittel, A Gieseke, CH House, A Boetius
    posted to physiology anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:58:41 as ** along with 1 person MeganBarnett
  • On the relationship between methane production and oxidation by anaerobic methanotrophic communities from cold seeps of the Gulf of Mexico
    Environmental Microbiology, Vol. 10, No. 5. (May 2008), pp. 1108-1117.
    by Orcutt, Beth!, Samarkin, Vladimir, Boetius, Antje, Joye, Samantha
    posted to physiology geochemistry anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:56:48 as **
  • Assimilation of methane and inorganic carbon by microbial communities mediating the anaerobic oxidation of methane
    Environmental Microbiology, Vol. 10, No. 9. (September 2008), pp. 2287-2298.
    by Wegener, Gunter, Niemann, Helge, Elvert, Marcus, Hinrichs, Kai-Uwe, Boetius, Antje
    posted to physiology biochemistry anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:55:37 as ** along with 1 person faluesken
  • Anaerobic Methane Oxidation: Occurrence and Ecology.
    Applied and environmental microbiology, Vol. 39, No. 1. (January 1980), pp. 194-204.
    by Alexander J B J Zehnder, Thomas D D Brock
    posted to review geochemistry anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:53:14 as **
  • Inhibition Experiments on Anaerobic Methane Oxidation.
    Applied and environmental microbiology, Vol. 50, No. 4. (October 1985), pp. 940-945.
    by Marc J J Alperin, William S S Reeburgh
    posted to biochemistry anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:52:54 as **
  • Biomarker evidence for widespread anaerobic methane oxidation in Mediterranean sediments by a consortium of methanogenic archaea and bacteria. The Medinaut Shipboard Scientific Party.
    Applied and environmental microbiology, Vol. 66, No. 3. (March 2000), pp. 1126-1132.
    by RD Pancost, JS Sinninghe Damsté, S de Lint, MJ van der Maarel, JC Gottschal
    posted to geochemistry anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:52:35 as **
  • New perspectives on anaerobic methane oxidation.
    Environmental microbiology, Vol. 2, No. 5. (October 2000), pp. 477-484.
    by DL Valentine, WS Reeburgh
    posted to review anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:49:00 as **
  • Biogeochemical and molecular signatures of anaerobic methane oxidation in a marine sediment.
    Applied and environmental microbiology, Vol. 67, No. 4. (April 2001), pp. 1646-1656.
    by TR Thomsen, K Finster, NB Ramsing
    posted to geochemistry ecology anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:48:44 as **
  • Thermodynamic and Kinetic Requirements in Anaerobic Methane Oxidizing Consortia Exclude Hydrogen, Acetate, and Methanol as Possible Electron Shuttles.
    Microbial ecology, Vol. 42, No. 1. (July 2001), pp. 1-10.
    by K.B. B Sørensen, K. Finster, N.B. B Ramsing
    posted to physiology growth_thermo anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:47:48 as **
  • Biogeochemistry and microbial ecology of methane oxidation in anoxic environments: a review.
    Antonie van Leeuwenhoek, Vol. 81, No. 1-4. (August 2002), pp. 271-282.
    by DL Valentine
    posted to review anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:47:01 as **
  • Growth and methane oxidation rates of anaerobic methanotrophic archaea in a continuous-flow bioreactor.
    Applied and environmental microbiology, Vol. 69, No. 9. (September 2003), pp. 5472-5482.
    by PR Girguis, VJ Orphan, SJ Hallam, EF DeLong
    posted to physiology anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:45:29 as **
  • Identification of methyl coenzyme M reductase A (mcrA) genes associated with methane-oxidizing archaea.
    Appl Environ Microbiol, Vol. 69, No. 9. (September 2003), pp. 5483-5491.
    by SJ Hallam, PR Girguis, CM Preston, PM Richardson, EF DeLong
    posted to molecular ecology anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:45:06 as ** along with 1 person llebrun
  • Biogeochemical processes at the fringe of a landfill leachate pollution plume: potential for dissolved organic carbon, Fe(II), Mn(II), NH4, and CH4 oxidation.
    Journal of contaminant hydrology, Vol. 73, No. 1-4. (September 2004), pp. 181-205.
    by BM van Breukelen, J Griffioen
    posted to geochemistry anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:44:15 as **
  • Reverse Methanogenesis: Testing the Hypothesis with Environmental Genomics
    Science, Vol. 305, No. 5689. (3 September 2004), pp. 1457-1462.
    by Steven J Hallam, Nik Putnam, Christina M Preston, John C Detter, Daniel Rokhsar, Paul M Richardson, Edward F Delong
    posted to metagenomics anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:43:28 as ** along with 4 people and 1 group jmeppley bluto calamar cursonivel1 cursonivel1
  • A genomic view of methane oxidation by aerobic bacteria and anaerobic archaea.
    Genome biology, Vol. 6, No. 2. (2005)
    by L Chistoserdova, JA Vorholt, ME Lidstrom
    posted to methylotroph metagenomics genome anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:42:56 as **
  • Characterization of a deep-sea microbial mat from an active cold seep at the Milano mud volcano in the Eastern Mediterranean Sea.
    FEMS microbiology ecology, Vol. 54, No. 1. (1 September 2005), pp. 47-56.
    by SK Heijs, JS Damsté, LJ Forney
    posted to geochemistry ecology anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:41:02 as **
  • Cooccurrence of aerobic and anaerobic methane oxidation in the water column of Lake Plusssee.
    Applied and environmental microbiology, Vol. 71, No. 12. (December 2005), pp. 8925-8928.
    by G Eller, L Känel, M Krüger
    posted to geochemistry ecology anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:39:06 as **
  • Aerobic and anaerobic methanotrophs in the Black Sea water column
    Environmental Microbiology, Vol. 8, No. 10. (October 2006), pp. 1844-1856.
    by Schubert, J Carsten, Coolen, JL Marco, Neretin, N Lev, Schippers, Axel, Abbas, Ben, Durisch-Kaiser, Edith, Wehrli, Bernhard, Hopmans, C Ellen, Damste, Jaap S Sinninghe, Wakeham, Stuart, Kuypers, MM Marcel
    posted to geochemistry ecology black_sea anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:37:42 as **
  • Adding handles to unhandy substrates: anaerobic hydrocarbon activation mechanisms.
    Current opinion in chemical biology, Vol. 11, No. 2. (April 2007), pp. 188-194.
    by J Heider
    posted to biochemistry anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:37:05 as **
  • Diversity and abundance of aerobic and anaerobic methane oxidizers at the Haakon Mosby Mud Volcano, Barents Sea.
    Applied and environmental microbiology, Vol. 73, No. 10. (May 2007), pp. 3348-3362.
    by T Lösekann, K Knittel, T Nadalig, B Fuchs, H Niemann, A Boetius, R Amann
    posted to ecology anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:35:06 as **
  • Acetylene as fast food: implications for development of life on anoxic primordial Earth and in the outer solar system.
    Astrobiology, Vol. 8, No. 1. (February 2008), pp. 45-58.
    by RS Oremland, MA Voytek
    posted to geochemistry by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:31:25 as **
  • Characterization of the thioether product formed from the thiolytic cleavage of the alkyl-nickel bond in methyl-coenzyme M reductase.
    Biochemistry, Vol. 47, No. 8. (26 February 2008), pp. 2661-2667.
    by RC Kunz, M Dey, SW Ragsdale
    posted to methanogen biochemistry anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:30:17 as **
  • Numbers, biomass and cultivable diversity of microbial populations relate to depth and borehole-specific conditions in groundwater from depths of 4-450 m in Olkiluoto, Finland.
    The ISME journal, Vol. 2, No. 7. (July 2008), pp. 760-775.
    by K Pedersen, J Arlinger, S Eriksson, A Hallbeck, L Hallbeck, J Johansson
    posted to geochemistry anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:27:47 as **
  • Planktonic and sediment-associated aerobic methanotrophs in two seep systems along the North American margin.
    Applied and environmental microbiology, Vol. 74, No. 13. (July 2008), pp. 3985-3995.
    by PL Tavormina, W Ussler, VJ Orphan
    posted to ecology anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:26:31 as **
  • Geomicrobial characterization of gas hydrate-bearing sediments along the mid-Chilean margin.
    FEMS microbiology ecology, Vol. 65, No. 1. (July 2008), pp. 15-30.
    by LJ Hamdan, PM Gillevet, M Sikaroodi, JW Pohlman, RE Plummer, RB Coffin
    posted to geochemistry anme by kinestetika to the group microbiology_nijmegen on 2008-08-14 11:26:00 as **
  • How to get more out of molecular fingerprints: practical tools for microbial ecology
    Environmental Microbiology, Vol. 10, No. 6. (2008), pp. 1571-1581.
    by Massimo Marzorati, Lieven Wittebolle, Nico Boon, Daniele Daffonchio, Willy Verstraete
    posted to methods ecological_theory by kinestetika to the group microbiology_nijmegen on 2008-08-14 08:27:30 as *** along with 1 person vrich
  • Cultivation of denitrifying bacteria: optimization of isolation conditions and diversity study.
    Applied and environmental microbiology, Vol. 72, No. 4. (April 2006), pp. 2637-2643.
    by K Heylen, B Vanparys, L Wittebolle, W Verstraete, N Boon, P De Vos
    posted to wastewater isolation ecology denitrification biodiversity by kinestetika to the group microbiology_nijmegen on 2008-08-14 08:21:07 as ***
  • A theoretical study on the amount of ATP required for synthesis of microbial cell material.
    Antonie van Leeuwenhoek, Vol. 39, No. 3. (1973), pp. 545-565.
    by AH Stouthamer
    posted to growth_thermo by kinestetika to the group microbiology_nijmegen on 2008-08-13 21:31:05 as **
  • Comparison of maximum cell yield and maintenance coefficients in axenic cultures and activated sludge communities
    Biotechnology and Bioengineering, Vol. 20, No. 12. (2005), pp. 1883-1893.
    by P Pipyn, W Verstraete
    posted to review growth_thermo by kinestetika to the group microbiology_nijmegen on 2008-08-13 21:28:27 as **
  • A bead-based method for multiplexed identification and quantitation of DNA sequences using flow cytometry.
    Applied and environmental microbiology, Vol. 66, No. 10. (October 2000), pp. 4258-4265.
    by A Spiro, M Lowe, D Brown
    posted to molecular methods by kinestetika to the group microbiology_nijmegen on 2008-08-13 21:20:17 as ***
  • Why is metabolic labour divided in nitrification?
    Trends in Microbiology, Vol. 14, No. 5. (May 2006), pp. 213-219.
    by Engracia Costa, Julio Perez, Jan-Ulrich Kreft
    posted to physiology nitrification by kinestetika to the group microbiology_nijmegen on 2008-08-13 19:57:29 as read along with 1 person robert
  • Heat production by ruminal bacteria in continuous culture and its relationship to maintenance energy.
    Journal of bacteriology, Vol. 168, No. 2. (November 1986), pp. 694-701.
    by JB Russell
    posted to methods growth_thermo by kinestetika to the group microbiology_nijmegen on 2008-08-13 19:43:49 as ***
  • Adaptations to energy stress dictate the ecology and evolution of the Archaea
    Nature Reviews Microbiology, Vol. 5, No. 4. (05 March 2007), pp. 316-323.
    by David L Valentine
    posted to physiology lipids evolution anme by kinestetika to the group microbiology_nijmegen on 2008-08-13 19:31:43 as *****
  • Two c-type cytochromes, NirM and NirC, encoded in the nir gene cluster of Pseudomonas aeruginosa act as electron donors for nitrite reductase.
    Biochemical and biophysical research communications, Vol. 288, No. 5. (16 November 2001), pp. 1223-1230.
    by N Hasegawa, H Arai, Y Igarashi
    posted to nirs denitrification biochemistry by kinestetika to the group microbiology_nijmegen on 2008-08-06 15:29:10 as **
  • RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits.
    BMC Bioinformatics, Vol. 7 (2006)
    by H Teeling, FO Gloeckner
    posted to phylogeny16s evolution by Katje to the group microbiology_nijmegen on 2008-08-06 14:05:59 as * along with 1 person operon
  • notes A bacterial metapopulation adapts locally to phage predation despite global dispersal
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 293-297.
    by Victor Kunin, Shaomei He, Falk Warnecke, Brook S Peterson, Garcia, Matthew Haynes, Natalia Ivanova, Linda L Blackall, Mya Breitbart, Forest Rohwer, Katherine D Mcmahon, Philip Hugenholtz
    posted to wastewater virus metagenomics ecology by kinestetika to the group microbiology_nijmegen on 2008-08-04 13:33:19 as read along with 2 people jmeppley Thaverkamp
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