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Systematic Biology

Articles from the last few issues of Systematic Biology © Taylor and Francis Ltd
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  • Selecting Taxa to Save or Sequence: Desirable Criteria and a Greedy Solution
    Systematic Biology, Vol. 57, No. 6. (2008), pp. 825-834.
    by Magnus Bordewich, Allen G Rodrigo, Charles Semple
    posted by 1 person skembel
  • Evidence for a New Root of the Tree of Life
    Systematic Biology, Vol. 57, No. 6. (2008), pp. 835-843.
    by James A Lake, Jacqueline A Servin, Craig W Herbold, Ryan G Skophammer
    posted by 2 people Berkeley Mycology stajich
  • The Impact of Reticulate Evolution on Genome Phylogeny
    Systematic Biology, Vol. 57, No. 6., pp. 844-856.
    by Robert Beiko, Ford F Doolittle, Robert Charlebois
  • Phylogeny of the Beaked Whale Genus Mesoplodon (Ziphiidae: Cetacea) Revealed by Nuclear Introns: Implications for the Evolution of Male Tusks
    Systematic Biology, Vol. 57, No. 6., pp. 857-875.
    by Merel Dalebout, Debbie Steel, Scott S Baker
  • Comparison of Methods for Species-Tree Inference in the Sawfly Genus Neodiprion (Hymenoptera: Diprionidae)
    Systematic Biology, Vol. 57, No. 6., pp. 876-890.
    by Catherine Linnen, Brian Farrell
  • The Modified Gap Excess Ratio (GER*) and the Stratigraphic Congruence of Dinosaur Phylogenies
    Systematic Biology, Vol. 57, No. 6., pp. 891-904.
    by Matthew Wills, Paul Barrett, Julia Heathcote
  • The Influence of Model Averaging on Clade Posteriors: An Example Using the Triggerfishes (Family Balistidae)
    Systematic Biology, Vol. 57, No. 6., pp. 905-919.
    by Alex Dornburg, Francesco Santini, Michael Alfaro
  • Resolving Arthropod Phylogeny: Exploring Phylogenetic Signal within 41 kb of Protein-Coding Nuclear Gene Sequence
    Systematic Biology, Vol. 57, No. 6., pp. 920-938.
    by Jerome Regier, Jeffrey Shultz, Austen Ganley, April Hussey, Diane Shi, Bernard Ball, Andreas Zwick, Jason Stajich, Michael Cummings, Joel Martin, Clifford Cunningham
  • Filtered Z-Closure Supernetworks for Extracting and Visualizing Recurrent Signal from Incongruent Gene Trees
    Systematic Biology, Vol. 57, No. 6., pp. 939-947.
    by James Whitfield, Sydney Cameron, Daniel Huson, Mike Steel
  • Consistent Estimation of Divergence Times in Phylogenetic Trees with Local Molecular Clocks
    Systematic Biology, Vol. 57, No. 6., pp. 947-954.
    by Bodil Svennblad
  • A Review of: Phylogeny and Evolution of the Mollusca
    Systematic Biology, Vol. 57, No. 6., pp. 955-956.
    by Dai Herbert
  • Penalized Likelihood Phylogenetic Inference: Bridging the Parsimony-Likelihood Gap
    Systematic Biology, Vol. 57, No. 5. (October 2008), pp. 665-674.
    by Kim, Junhyong, Sanderson, Michael
    posted by 3 people skembel aprasad nuin
  • A Model-Based Approach to Study Nearest-Neighbor Influences Reveals Complex Substitution Patterns in Non-coding Sequences
    Systematic Biology, Vol. 57, No. 5. (October 2008), pp. 675-692.
    by Baele, Guy, Van de Peer, Yves, Vansteelandt, Stijn
  • A Comparative Study in Ancestral Range Reconstruction Methods: Retracing the Uncertain Histories of Insular Lineages
    Systematic Biology, Vol. 57, No. 5. (October 2008), pp. 693-707.
    by Clark, John, Ree, Richard, Alfaro, Michael, King, Matthew, Wagner, Warren, Roalson, Eric
  • Statistical Tests between Competing Hypotheses of Hox Cluster Evolution
    Systematic Biology, Vol. 57, No. 5. (October 2008), pp. 708-718.
    by Lanfear, Robert, Bromham, Lindell
    posted by 1 person druvus
  • Comparison of Species Tree Methods for Reconstructing the Phylogeny of Bearded Manakins (Aves: Pipridae, Manacus) from Multilocus Sequence Data
    Systematic Biology, Vol. 57, No. 5. (October 2008), pp. 719-731.
    by Brumfield, Robb, Liu, Liang, Lum, David, Edwards, Scott
  • Multiple Colonizations, In Situ Speciation, and Volcanism-Associated Stepping-Stone Dispersals Shaped the Phylogeography of the Macaronesian Red Fescues (Festuca L., Gramineae)
    Systematic Biology, Vol. 57, No. 5. (October 2008), pp. 732-749.
    by Diaz-Perez, Antonio, Sequeira, Miguel, Santos-Guerra, Arnoldo, Catalan, Pilar
  • Statistical Assignment of DNA Sequences Using Bayesian Phylogenetics
    Systematic Biology, Vol. 57, No. 5. (2008), pp. 750-757.
    by Kasper Munch, Wouter Boomsma, John P Huelsenbeck, Eske Willerslev, Rasmus Nielsen
    posted by 3 people iSEEM djkt sim82
  • A Rapid Bootstrap Algorithm for the RAxML Web Servers
    Systematic Biology, Vol. 57, No. 5. (October 2008), pp. 758-771.
    by Stamatakis, Alexandros, Hoover, Paul, Rougemont, Jacques
    posted by 1 person aprasad
  • Wagner and Dollo: A Stochastic Duet by Composing Two Parsimonious Solos
    Systematic Biology, Vol. 57, No. 5. (October 2008), pp. 772-784.
    by Alekseyenko, Alexander, Lee, Christopher, Suchard, Marc
  • Trees of Trees: An Approach to Comparing Multiple Alternative Phylogenies
    Systematic Biology, Vol. 57, No. 5. (2008), pp. 785-794.
    by Tom M Nye
    posted by 1 person aprasad
  • Rooting and Dating Maples (Acer) with an Uncorrelated-Rates Molecular Clock: Implications for North American/Asian Disjunctions
    Systematic Biology, Vol. 57, No. 5. (October 2008), pp. 795-808.
    by Renner, Susanne, Grimm, Guido, Schneeweiss, Gerald, Stuessy, Tod, Ricklefs, Robert
  • The Use of Mean Instead of Smallest Interspecific Distances Exaggerates the Size of the Barcoding Gap and Leads to Misidentification
    Systematic Biology, Vol. 57, No. 5. (October 2008), pp. 809-813.
    by Meier, Rudolf, Zhang, Guanyang, Ali, Farhan
  • A Justification for Reporting the Majority-Rule Consensus Tree in Bayesian Phylogenetics
    Systematic Biology, Vol. 57, No. 5. (October 2008), pp. 814-821.
    by Holder, Mark, Sukumaran, Jeet, Lewis, Paul
  • A review of The Cambridge Companion to the Philosophy of Biology
    Systematic Biology, Vol. 57, No. 5. (October 2008), pp. 822-823.
    by Morrison, David
  • A Likelihood Framework for Estimating Phylogeographic History on a Continuous Landscape
    Systematic Biology, Vol. 57, No. 4. (August 2008), pp. 544-561.
    by Lemmon, Alan, Lemmon, Emily Moriarty
  • The Role of Geography and Ecological Opportunity in the Diversification of Day Geckos (<i>Phelsuma</i>)
    Systematic Biology, Vol. 57, No. 4. (2008), pp. 562-573.
    by Luke J Harmon, Jane Melville, Allan Larson, Jonathan B Losos
    posted by 4 people macroevolution johnjschenk ljharmon Rosenblum-Harmon Lab Papers
  • The Vestigial Olfactory Receptor Subgenome of Odontocete Whales: Phylogenetic Congruence between Gene-Tree Reconciliation and Supermatrix Methods
    Systematic Biology, Vol. 57, No. 4. (August 2008), pp. 574-590.
    by Mcgowen, Michael, Clark, Clay, Gatesy, John
  • Phylogenetic Signal, Evolutionary Process, and Rate
    Systematic Biology, Vol. 57, No. 4. (2008), pp. 591-601.
    by Liam J Revell, Luke J Harmon, David C Collar
    posted by 3 people aprasad ljharmon Rosenblum-Harmon Lab Papers
  • On the Distributions of Bootstrap Support and Posterior Distributions for a Star Tree
    Systematic Biology, Vol. 57, No. 4. (2008), pp. 602-612.
    by Edward Susko
    posted by 1 person aprasad
  • Assessing the Performance of Single-Copy Genes for Recovering Robust Phylogenies
    Systematic Biology, Vol. 57, No. 4. (August 2008), pp. 613-627.
    by Aguileta, , Marthey, , Chiapello, , Lebrun, -H, Rodolphe, , Fournier, , Gendrault-Jacquemard, , Giraud,
  • An Integrative Method for Delimiting Cohesion Species: Finding the Population-Species Interface in a Group of Californian Trapdoor Spiders with Extreme Genetic Divergence and Geographic Structuring
    Systematic Biology, Vol. 57, No. 4. (2008), pp. 628-646.
    by Jason E Bond, Amy K Stockman
    posted by 2 people ljharmon Rosenblum-Harmon Lab Papers
  • More Taxa Are Not Necessarily Better for the Reconstruction of Ancestral Character States
    Systematic Biology, Vol. 57, No. 4. (2008), pp. 647-653.
    by Guoliang Li, Mike Steel, Louxin Zhang
    posted by 1 person ljharmon
  • Phylogeny Estimation and Alignment via POY versus Clustal + PAUP*: A Response to Ogden and Rosenberg (2007)
    Systematic Biology, Vol. 57, No. 4. (August 2008), pp. 653-657.
    by Lehtonen, Samuli
  • A review of Phylogenetic Trees Made Easy: A How-to Manual, third edition
    Systematic Biology, Vol. 57, No. 4. (August 2008), pp. 658-660.
    by Morrison, David
  • A review of The New Taxonomy
    Systematic Biology, Vol. 57, No. 4. (August 2008), pp. 660-663.
    by Smith, Vincent
  • Optimal Data Partitioning and a Test Case for Ray-Finned Fishes (Actinopterygii) Based on Ten Nuclear Loci
    Systematic Biology, Vol. 57, No. 4. (August 2008), pp. 519-539.
    by Li, Chenhong, Lu, Guoqing, Orti, Guillermo
    posted by 2 people skembel aprasad
  • Perfectly Misleading Distances from Ternary Characters
    Systematic Biology, Vol. 57, No. 4. (August 2008), pp. 540-543.
    by Bandelt, Hans-Jurgen, Fischer, Mareike
  • The PhyLoTA Browser: Processing GenBank for Molecular Phylogenetics Research
    Systematic Biology, Vol. 57, No. 3. (2008), pp. 335-346.
    by Michael J Sanderson, Darren Boss, Duhong Chen, Karen A Cranston, Andre Wehe
    posted by 1 person skembel
  • Optimizing Automated AFLP Scoring Parameters to Improve Phylogenetic Resolution
    Systematic Biology, Vol. 57, No. 3. (June 2008), pp. 347-366.
    by Holland, Barbara, Clarke, Andrew, Meudt, Heidi
  • Synonymous Substitutions Substantially Improve Evolutionary Inference from Highly Diverged Proteins
    Systematic Biology, Vol. 57, No. 3. (June 2008), pp. 367-377.
    by Seo, Tae-Kun, Kishino, Hirohisa
  • Estimating Evolution of Temporal Sequence Changes: A Practical Approach to Inferring Ancestral Developmental Sequences and Sequence Heterochrony
    Systematic Biology, Vol. 57, No. 3. (June 2008), pp. 378-387.
    by Harrison, Luke, Larsson, Hans
  • Phylogeny and Evolution of Glass Sponges (Porifera, Hexactinellida)
    Systematic Biology, Vol. 57, No. 3. (June 2008), pp. 388-405.
    by Dohrmann, Martin, Janussen, Dorte, Reitner, Joachim, Collins, Allen, Worheide, Gert
  • A Bayesian Perspective on a Non-parsimonious Parsimony Model
    Systematic Biology, Vol. 57, No. 3. (June 2008), pp. 406-419.
    by Huelsenbeck, John, Ane, Cecile, Larget, Bret, Ronquist, Fredrik
    posted by 1 person nuin
  • Branch Lengths, Support, and Congruence: Testing the Phylogenomic Approach with 20 Nuclear Loci in Snakes
    Systematic Biology, Vol. 57, No. 3. (June 2008), pp. 420-431.
    by Wiens, John, Kuczynski, Caitlin, Smith, Sarah, Mulcahy, Daniel, Sites, Jack, Townsend, Ted, Reeder, Tod
  • Sympatry Inference and Network Analysis in Biogeography
    Systematic Biology, Vol. 57, No. 3. (June 2008), pp. 432-448.
    by Dos Santos, Daniel, Fernandez, Hugo, Cuezzo, Maria Gabriela, Dominguez, Eduardo
  • Codivergence in Heteromyid Rodents (Rodentia: Heteromyidae) and Their Sucking Lice of the Genus Fahrenholzia (Phthiraptera: Anoplura)
    Systematic Biology, Vol. 57, No. 3. (June 2008), pp. 449-465.
    by Light, Jessica, Hafner, Mark
  • The Reticulate History of Medicago (Fabaceae)
    Systematic Biology, Vol. 57, No. 3. (June 2008), pp. 466-482.
    by Maureira-Butler, Ivan, Pfeil, Bernard, Muangprom, Amorntip, Osborn, Thomas, Doyle, Jeff
  • A Novel Test for Host-Symbiont Codivergence Indicates Ancient Origin of Fungal Endophytes in Grasses
    Systematic Biology, Vol. 57, No. 3. (June 2008), pp. 483-498.
    by Schardl, , Craven, , Speakman, , Stromberg, , Lindstrom, , Yoshida,
  • Morphology and Placental Mammal Phylogeny
    Systematic Biology, Vol. 57, No. 3. (2008), pp. 499-503.
    by Mark S Springer, Robert W Meredith, Eduardo Eizirik, Emma Teeling, William J Murphy
    posted by 1 person aprasad
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