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Tag fungi [377 articles]

Recent papers classified by the tag fungi.
  • Rapid and Recent Changes in Fungal Fruiting Patterns
    Science, Vol. 316, No. 5821. (6 April 2007), 71.
    by AC Gange, EG Gange, TH Sparks, L Boddy
    posted to climate fungi warming by yeastbeast on 2007-06-20 19:51:19 as *** along with 1 person and 1 group luth Climate Change
  • A rapid method to quantify pro-oxidant activity in cultures of wood-decaying white-rot fungi.
    J Microbiol Methods, Vol. 61, No. 2. (May 2005), pp. 261-271.
    by A N N Kapich, B A A Prior, T Lundell, A Hatakka
    posted to fungi white-rot wood-decaying by Terkko on 2005-03-03 13:11:31 as **
  • Conservation of divergent transcription in fungi
    Trends in Genetics, Vol. 24, No. 5. (May 2008), pp. 207-211.
    by Philip R Kensche, Martin Oti, Bas E Dutilh, Martijn A Huynen
    posted to transcription fungi evolution divergent_genes by stajich on 2008-04-25 23:37:16 as ** along with 1 person and 1 group nklee Berkeley Mycology
  • Determination of keratin degradation by fungi using keratin azure
    Med Mycology, Vol. 42, No. 3. (2004), pp. 239-246.
    by JA Scott, WA Untereiner
    posted to fungi keratin keritinophilic by stajich on 2007-03-20 18:20:28 as ***
  • The Ajellomycetaceae, a new family of vertebrate-associated Onygenales
    Mycologia, Vol. 96, No. 4. (1 July 2004), pp. 812-821.
    by Wendy A Untereiner, James A Scott, Francoise A Naveau, Lynne Sigler, Jason Bachewich, Andrea Angus
    posted to fungi onygenales phylogeny systematics by stajich on 2007-12-11 01:03:21 as read along with 1 group Berkeley Mycology
  • Fungal biodiversity in aquatic habitats
    Biodiversity and Conservation, Vol. 16, No. 1. (13 January 2007), pp. 49-67.
    by Carol Shearer, Enrique Descals, Brigitte Kohlmeyer, Jan Kohlmeyer, Ludmila Marvanová, David Padgett, David Porter, Huzefa Raja, John Schmit, Holly Thorton, Hermann Voglymayr
    posted to aquatic biodiversity chytrid fungi by stajich on 2008-02-23 20:20:26 as ** along with 1 group Berkeley Mycology
  • Dandruff-associated Malassezia genomes reveal convergent and divergent virulence traits shared with plant and human fungal pathogens
    Proceedings of the National Academy of Sciences (13 November 2007), 0706756104.
    by Jun Xu, Charles W Saunders, Ping Hu, Raymond A Grant, Teun Boekhout, Eiko E Kuramae, James W Kronstad, Yvonne M Deangelis, Nancy L Reeder, Kevin R Johnstone, Meredith Leland, Angela M Fieno, William M Begley, Yiping Sun, Martin P Lacey, Tanuja Chaudhary, Thomas Keough, Lien Chu, Russell Sears, Bo Yuan, Thomas L Dawson
    posted to basidiomycota dandruff fungi genome by stajich on 2007-11-13 19:15:18 as **
  • Impact of light on Hypocrea jecorina and the multiple cellular roles of ENVOY in this process
    BMC Genomics, Vol. 8 (04 December 2007), 449.
    by Andre Schuster, Christian P Kubicek, Martina A Friedl, Irina S Druzhinina, Monika Schmoll
    posted to fungi light_response trichoderma by stajich on 2007-12-05 18:21:10 as ** along with 1 group Berkeley Mycology
  • Photosensing Fungi: Phytochrome in the Spotlight
    Current Biology, Vol. 15, No. 20. (25 October 2005), pp. R829-R832.
    by Alexander Idnurm, Joseph Heitman
    posted to fungi light_response phytochrome by stajich on 2007-12-07 18:41:52 as ** along with 1 group Berkeley Mycology
  • Pathogenic fungus harbours endosymbiotic bacteria for toxin production
    Nature, Vol. 437, No. 7060., pp. 884-888.
    by Laila P Partida-Martinez, Christian Hertweck
    posted to bacteria fungi pathogen rhizopus symbiosis zygomycota by stajich on 2008-03-03 23:44:29 as ** along with 4 people and 1 group jwortman dayjm robert manzanita Berkeley Mycology
  • The fungus Armillaria bulbosa is among the largest and oldest living organisms
    Nature, Vol. 356, No. 6368. (2 April 1992), pp. 428-431.
    by Myron L Smith, Johann N Bruhn, James B Anderson
    posted to armillaria fungi genotype largest_organism by stajich on 2008-04-13 23:13:48 as ** along with 1 group Berkeley Mycology
  • Neurospora crassa ve-1 affects asexual conidiation
    Fungal Genetics and Biology, Vol. In Press, Corrected Proof
    by Ozgur Bayram, Sven Krappmann, Stephan Seiler, Nico Vogt, Gerhard H Braus
    posted to conidial filamentous fungi neurospora sexual_development by stajich on 2007-12-07 18:35:43 as ** along with 1 group Berkeley Mycology
  • Complex evolution of the DAL5 transporter family
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Linda Hellborg, Megan Woolfit, Mattias A Hellborg, Jure Piskur
    posted to yeast transporter saccharomyces gene_family gene_duplication fungi ascomycota by stajich on 2008-06-09 05:45:17 as ** along with 1 person and 1 group neils Berkeley Mycology
  • Accidental Virulence, Cryptic Pathogenesis, Martians, Lost Hosts, and the Pathogenicity of Environmental Microbes
    Eukaryotic Cell, Vol. 6, No. 12. (1 December 2007), pp. 2169-2174.
    by Arturo Casadevall, Liise-Anne Pirofski
    posted to fungi pathogen virulence virulence_factor by stajich on 2008-01-29 19:10:32 as ** along with 1 group Berkeley Mycology
  • Revisiting the Saccharomyces cerevisiae predicted ORFeome
    Genome Res. (23 May 2008), gr.076661.108.
    by Qian-Ru Li, Anne-Ruxandra Carvunis, Haiyuan Yu, Jing-Dong J Han, Quan Zhong, Nicolas Simonis, Stanley Tam, Tong Hao, Niels J Klitgord, Denis Dupuy, Danny Mou, Ilan Wapinski, Aviv Regev, David E Hill, Michael E Cusick, Marc Vidal
    posted to yeast saccharomyces molecular_evolution genome_annotation fungi by stajich on 2008-05-28 05:57:18 as ** along with 4 people and 1 group jyuh biehl nklee dbensasson Berkeley Mycology
  • Evolution of Budding Yeast Prion-determinant Sequences Across Diverse Fungi
    Journal of Molecular Biology, Vol. 368, No. 1. (20 April 2007), pp. 273-282.
    by Luke B Harrison, Zhan Yu, Jason E Stajich, Fred S Dietrich, Paul M Harrison
    posted to evolution fungi prion yeast by stajich on 2007-05-22 06:34:46 as read
  • Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective.
    PLoS ONE, Vol. 1 (2006)
    by RH Nilsson, M Ryberg, E Kristiansson, K Abarenkov, KH Larsson, U Kõljalg
    posted to taxonomy fungi database by stajich on 2008-08-16 00:55:03 as ** along with 1 person and 1 group GustavoLacerda Berkeley Mycology
  • Reconstructing the early evolution of Fungi using a six-gene phylogeny
    Nature, Vol. 443, No. 7113., pp. 818-822.
    by Timothy Y James, Frank Kauff, Conrad L Schoch, Brandon P Matheny, Valérie Hofstetter, Cymon J Cox, Gail Celio, Cécile Gueidan, Emily Fraker, Jolanta Miadlikowska, Thorsten H Lumbsch, Alexandra Rauhut, Valérie Reeb, Elizabeth A Arnold, Anja Amtoft, Jason E Stajich, Kentaro Hosaka, Gi-Ho Sung, Desiree Johnson, Ben O’rourke, Michael Crockett, Manfred Binder, Judd M Curtis, Jason C Slot, Zheng Wang, Andrew W Wilson, Arthur Schüßler, Joyce E Longcore, Kerry O’donnell, Sharon Mozley-Standridge, David Porter, Peter M Letcher, Martha J Powell, John W Taylor, Merlin M White, Gareth W Griffith, David R Davies, Richard A Humber, Joseph B Morton, Junta Sugiyama, Amy Y Rossman, Jack D Rogers, Don H Pfister, David Hewitt, Karen Hansen, Sarah Hambleton, Robert A Shoemaker, Jan Kohlmeyer, Brigitte Volkmann-Kohlmeyer, Robert A Spotts, Maryna Serdani, Pedro W Crous, Karen W Hughes, Kenji Matsuura, Ewald Langer, Gitta Langer, Wendy A Untereiner, Robert Lücking, Burkhard Büdel, David M Geiser, André Aptroot, Paul Diederich, Imke Schmitt, Matthias Schultz, Rebecca Yahr, David S Hibbett, François Lutzoni, David J Mclaughlin, Joseph W Spatafora, Rytas Vilgalys
    posted to fungi phylogeny by stajich on 2006-12-08 21:05:26 as ** along with 2 people Patola seitentaisei
  • Phylogenomic analysis of non-ribosomal peptide synthetases in the genus Aspergillus.
    Gene, Vol. 383 (15 November 2006), pp. 24-32.
    by RA Cramer, JE Stajich, Y Yamanaka, FS Dietrich, WJ Steinbach, JR Perfect
    posted to aspergillus fungi nrps phylogenomics by stajich on 2006-12-08 21:04:02 as read along with 1 person and 1 group rvosa FAB-lab
  • A Fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis
    BMC Evolutionary Biology, Vol. 6 (22 November 2006), 99.
    by David A Fitzpatrick, Mary E Logue, Jason E Stajich, Geraldine Butler
    posted to evolution fungi phylogeny by stajich on 2006-12-08 21:03:25 as read along with 4 people and 1 group druvus dpollard lusk cmzmasek EisenLab
  • A novel regulator couples sporogenesis and trehalose biogenesis in Aspergillus nidulans.
    PLoS ONE, Vol. 2, No. 10. (2007)
    by M Ni, JH Yu
    posted to sugar spore regulation gene fungi aspergillus by stajich on 2008-08-16 00:50:20 as ** along with 1 group Berkeley Mycology
  • Pheromones are essential for male fertility and sufficient to direct chemotropic polarized growth of trichogynes during mating in Neurospora crassa.
    Eukaryotic cell, Vol. 5, No. 3. (March 2006), pp. 544-554.
    by H Kim, KA Borkovich
    posted to pheremone neurospora mating_genes fungi development by stajich on 2008-05-22 07:20:39 as ** along with 1 group Berkeley Mycology
  • Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis.
    PLoS ONE, Vol. 3, No. 6. (2008)
    by DM Soanes, I Alam, M Cornell, HM Wong, C Hedeler, NW Paton, M Rattray, SJ Hubbard, SG Oliver, NJ Talbot
    posted to phylogenomics genome fungi comparative_genomics analysis by stajich on 2008-08-16 00:49:43 as ** along with 1 person and 1 group GustavoLacerda Berkeley Mycology
  • A pheromone receptor gene, pre-1, is essential for mating type-specific directional growth and fusion of trichogynes and female fertility in Neurospora crassa.
    Molecular microbiology, Vol. 52, No. 6. (June 2004), pp. 1781-1798.
    by H Kim, KA Borkovich
    posted to pheremone neurospora mating_genes fungi development by stajich on 2008-05-22 07:17:54 as ** along with 1 group Berkeley Mycology
  • Ecologic niche modeling of Blastomyces dermatitidis in Wisconsin.
    PLoS ONE, Vol. 3, No. 4. (2008)
    by KD Reed, JK Meece, JR Archer, AT Peterson
    posted to fungi environmental_microbiology ecology blastomyces by stajich on 2008-08-16 00:45:59 as ** along with 1 group Berkeley Mycology
  • Evidence of mRNA-mediated intron loss in the human-pathogenic fungus Cryptococcus neoformans.
    Eukaryot Cell, Vol. 5, No. 5. (May 2006), pp. 789-793.
    by JE Stajich, FS Dietrich
    posted to cryptococcus fungi intron by stajich on 2007-05-22 06:18:15 as read along with 3 people and 3 groups dalloliogm raylim seitentaisei Web2 splicing yeast
  • The Genome of the Basidiomycetous Yeast and Human Pathogen Cryptococcus neoformans
    Science, Vol. 307, No. 5713. (25 February 2005), pp. 1321-1324.
    by Brendan J Loftus, Eula Fung, Paola Roncaglia, Don Rowley, Paolo Amedeo, Dan Bruno, Jessica Vamathevan, Molly Miranda, Iain J Anderson, James A Fraser, Jonathan E Allen, Ian E Bosdet, Michael R Brent, Readman Chiu, Tamara L Doering, Maureen J Donlin, Cletus A D'Souza, Deborah S Fox, Viktoriya Grinberg, Jianmin Fu, Marilyn Fukushima, Brian J Haas, James C Huang, Guilhem Janbon, Steven J Jones, Hean L Koo, Martin I Krzywinski, June K Kwon-Chung, Klaus B Lengeler, Rama Maiti, Marco A Marra, Robert E Marra, Carrie A Mathewson, Thomas G Mitchell, Mihaela Pertea, Florenta R Riggs, Steven L Salzberg, Jacqueline E Schein, Alla Shvartsbeyn, Heesun Shin, Martin Shumway, Charles A Specht, Bernard B Suh, Aaron Tenney, Terry R Utterback, Brian L Wickes, Jennifer R Wortman, Natasja H Wye, James W Kronstad, Jennifer K Lodge, Joseph Heitman, Ronald W Davis, Claire M Fraser, Richard W Hyman
    posted to cryptococcus fungi genome genome_paper by stajich on 2007-05-22 06:17:32 as **** along with 5 people and 3 groups labedan Cortel jwortman dalloliogm alexl Web2 splicing yeast
  • Differences in spontaneous mutation frequencies as a function of environmental stress in soil fungi at "Evolution Canyon," Israel.
    Proceedings of the National Academy of Sciences of the United States of America (9 April 2008)
    by Bernard C C Lamb, Snehal Mandaokar, Basma Bahsoun, Isabella Grishkan, Eviatar Nevo
    posted to fungi mutation_rate soil by stajich on 2008-04-13 21:47:44 as ** along with 1 group Berkeley Mycology
  • Life history and developmental processes in the basidiomycete Coprinus cinereus.
    Microbiol Mol Biol Rev, Vol. 64, No. 2. (June 2000), pp. 316-353.
    by U Kües
    posted to coprinus development fungi multicellular mushroom by stajich on 2006-12-08 20:37:57 as **
  • Distribution of NRPS gene families within the Neotyphodium/Epichloe complex
    Fungal Genetics and Biology, Vol. 44, No. 11. (November 2007), pp. 1180-1190.
    by Richard Johnson, Christine Voisey, Linda Johnson, Jennifer Pratt, Damien Fleetwood, Anar Khan, Gregory Bryan
    posted to fungi gene_family nrps by stajich on 2008-03-03 22:21:30 as ** along with 1 group Berkeley Mycology
  • The Aspergillus nidulans putative kinase, KfsA (kinase for septation), plays a role in septation and is required for efficient asexual spore formation
    Fungal Genetics and Biology, Vol. 44, No. 11. (November 2007), pp. 1205-1214.
    by Norio Takeshita, Kay Vienken, Anne Rolbetzki, Reinhard Fischer
    posted to asexual_development aspergillus fungi by stajich on 2008-03-03 22:18:10 as ** along with 1 group Berkeley Mycology
  • Purification and characterization of an autoregulatory substance capable of regulating the morphological transition in Candida albicans
    PNAS, Vol. 98, No. 8. (10 April 2001), pp. 4664-4668.
    by Ki-Bong Oh, Hiroshi Miyazawa, Toshimichi Naito, Hideaki Matsuoka
    posted to candida development fungi hyphael yeast by stajich on 2006-12-08 20:34:50 as **
  • Ascus types are phylogenetically misleading in Trapeliaceae and Agyriaceae (Ostropomycetidae, Ascomycota).
    Mycol Res, Vol. 111, No. Pt 9. (September 2007), pp. 1133-1141.
    by HT Lumbsch, I Schmitt, A Mangold, M Wedin
    posted to evolution fungi homoplasy phylogenetics by stajich on 2008-03-03 22:15:30 as ** along with 1 group Berkeley Mycology
  • Ecology. The advantages of togetherness.
    Science, Vol. 292, No. 5516. (20 April 2001), pp. 448-449.
    by E Cox, J Bonner
    posted to evolution fungi multicellular simulation by stajich on 2006-12-08 20:31:10 as **
  • Structure and duplication of the centrosome
    J Cell Sci, Vol. 120, No. 13. (1 July 2007), pp. 2139-2142.
    by Juliette Azimzadeh, Michel Bornens
    posted to centrosome evolution fungi metazoa multicellular by stajich on 2008-03-05 17:59:15 as ** along with 1 group Berkeley Mycology
  • Transcription Factor Substitution during the Evolution of Fungal Ribosome Regulation
    Molecular Cell, Vol. 29, No. 5. (14 March 2008), pp. 552-562.
    by Herve Hogues, Hugo Lavoie, Adnane Sellam, Maria Mangos, Terry Roemer, Enrico Purisima, Andre Nantel, Malcolm Whiteway
    posted to transcription_factor ribosomes fungi evolution by stajich on 2008-05-05 02:58:13 as ** along with 1 person and 1 group zwang Berkeley Mycology
  • Comparison of Morphogenetic Networks of Filamentous Fungi and Yeast
    Fungal Genetics and Biology, Vol. 34, No. 2. (November 2001), pp. 63-82.
    by Jurgen Wendland
    posted to development fungi multicellular by stajich on 2006-12-08 20:28:18 as **
  • Molecular genetics of sexual development in the mushroom Coprinus cinereus
    BioEssays, Vol. 24, No. 5. (2002), pp. 449-459.
    by Takashi Kamada
    posted to coprinus development fungi multicellular mushroom sexual_development by stajich on 2006-12-08 20:25:23 as **
  • Control of morphogenesis in the human fungal pathogen Penicillium marneffei.
    Int J Med Microbiol, Vol. 292, No. 5-6. (October 2002), pp. 331-347.
    by A Andrianopoulos
    posted to fungi multicellular by stajich on 2006-12-08 20:16:16 as **
  • Control of alternative RNA splicing and gene expression by eukaryotic riboswitches
    Nature (29 April 2007)
    by Ming T Cheah, Andreas Wachter, Narasimhan Sudarsan, Ronald R Breaker
    posted to fungi riboswitch by stajich on 2007-06-11 00:22:40 as **** along with 1 person austin
  • Molecular biology: RNA in control
    Nature, Vol. 447, No. 7143. (23 May 2007), pp. 391-393.
    by Benjamin J Blencowe, May Khanna
    posted to fungi review riboswitch by stajich on 2007-06-11 00:22:14 as ** along with 1 person saru
  • Comparative genome analysis across a kingdom of eukaryotic organisms: Specialization and diversification in the Fungi
    Genome Res. (5 November 2007), gr.6531807.
    by Michael J Cornell, Intikhab Alam, Darren M Soanes, Han M Wong, Cornelia Hedeler, Norman W Paton, Magnus Rattray, Simon J Hubbard, Nicholas J Talbot, Stephen G Oliver
    posted to fungal fungi genome by stajich on 2007-11-12 17:47:10 as ** along with 6 people and 1 group alanrw grahamc GustavoLacerda nklee idonaldson seitentaisei Berkeley Mycology
  • Recently discovered functions of glucosylceramides in plants and fungi.
    Cell Mol Life Sci, Vol. 60, No. 5. (May 2003), pp. 919-941.
    by D Warnecke, E Heinz
    posted to cellular_signaling fungal fungi multicellular by stajich on 2006-12-08 20:01:48 as **
  • Towards a molecular understanding of symbiont function: Identification of a fungal gene for the degradation of xylan in the fungus gardens of leaf-cutting ants
    BMC Microbiology, Vol. 8 (28 February 2008), 40.
    by Morten Schioett, Henrik, Lene Lange, Jacobus J Boomsma
    posted to rotting mutalism fungi ant by stajich on 2008-05-05 02:40:00 as ** along with 1 group Berkeley Mycology
  • Sex in fungi: lessons of gene regulation.
    Genet Mol Res, Vol. 2, No. 1. (31 March 2003), pp. 136-147.
    by CA Souza, CC Silva, AV Ferreira
    posted to fungi sexual_development by stajich on 2006-12-08 20:00:25 as ** along with 1 person angieju
  • Evolution of SET-domain protein families in the unicellular and multicellular Ascomycota fungi
    BMC Evolutionary Biology, Vol. 8 (01 July 2008), 190.
    by Chendhore S Veerappan, Zoya Avramova, Etsuko N Moriyama
    posted to yeast multicellular fungi filamentous by stajich on 2008-07-09 00:20:23 as ** along with 1 group Berkeley Mycology
  • Evolution of multicellularity in Metazoa: comparative analysis of the subcellular localization of proteins in Saccharomyces, Drosophila and Caenorhabditis.
    Cell Biol Int, Vol. 28, No. 3. (2004), pp. 171-178.
    by E Hazkani-Covo, EY Levanon, G Rotman, D Graur, A Novik
    posted to fungi metazoa multicellular protein_localization yeast by stajich on 2006-12-08 19:57:41 as **
  • Epigenetic remodeling of the fungal secondary metabolome.
    Organic & biomolecular chemistry, Vol. 6, No. 11. (7 June 2008), pp. 1895-1897.
    by RB Williams, JC Henrikson, AR Hoover, AE Lee, RH Cichewicz
    posted to secondary_metabolite fungi filamentous ascomycota by stajich on 2008-06-13 23:36:51 as ** along with 1 person and 1 group kengg Berkeley Mycology
  • Lessons from the Genome Sequence of Neurospora crassa: Tracing the Path from Genomic Blueprint to Multicellular Organism
    Microbiol. Mol. Biol. Rev., Vol. 68, No. 1. (1 March 2004), pp. 1-108.
    by Katherine A Borkovich, Lisa A Alex, Oded Yarden, Michael Freitag, Gloria E Turner, Nick D Read, Stephan Seiler, Deborah Bell-Pedersen, John Paietta, Nora Plesofsky, Michael Plamann, Marta Goodrich-Tanrikulu, Ulrich Schulte, Gertrud Mannhaupt, Frank E Nargang, Alan Radford, Claude Selitrennikoff, James E Galagan, Jay C Dunlap, Jennifer J Loros, David Catcheside, Hirokazu Inoue, Rodolfo Aramayo, Michael Polymenis, Eric U Selker, Matthew S Sachs, George A Marzluf, Ian Paulsen, Rowland Davis, Daniel J Ebbole, Alex Zelter, Eric R Kalkman, Rebecca O'Rourke, Frederick Bowring, Jane Yeadon, Chizu Ishii, Keiichiro Suzuki, Wataru Sakai, Robert Pratt
    posted to fungi genome multicellular neurospora by stajich on 2006-12-08 19:56:36 as ** along with 1 person hplatero
  • Multicellular microorganisms: laboratory versus nature.
    EMBO Rep, Vol. 5, No. 5. (May 2004), pp. 470-476.
    by Z Palková
    posted to fungi multicellular yeast by stajich on 2006-12-08 19:54:55 as **
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