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Tag method [968 articles]

Recent papers classified by the tag method.
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  • What is principal component analysis?
    Nature Biotechnology, Vol. 26, No. 3., pp. 303-304.
    by Markus Ringnér
    posted to method by zhouyu on 2008-04-01 13:36:45 as ** along with 53 people and 3 groups Yanno guhjy operon barry baaic dullhunk Bevan_Weir zeji gareth massivemayhem zwang GustavoLacerda GeeSharpMinor bmaust zambujo mingzhi starz1010101 maralena wchannels sunhwan jennifermbui kdelavega rsantana laharrin sobolevnrm fryanpan kengg rvosa dekay23 adacier hpaces waghsk rchauhan pavanghatty kristgy jfr bibay2004 xingxu quianominorleo craigwilson06 ashko markusd dayjm dimka i-stevenson chrissp100 tharris ale mjoach HugoMarcelo jdiezperezj rrbarb Nici baker-group FAB-lab Bioinformatics
  • BiskitA software platform for structural bioinformatics
    Bioinformatics, Vol. 23, No. 6. (15 March 2007), pp. 769-770.
    by Grunberg, Raik, Nilges, Michael, Leckner, Johan
    posted to method by zhouyu on 2008-04-02 09:12:03 as **
  • GeneTrack--a genomic data processing and visualization framework
    Bioinformatics, Vol. 24, No. 10. (15 May 2008), pp. 1305-1306.
    by Istvan Albert, Shinichiro Wachi, Cizhong Jiang, Franklin B Pugh
    posted to method genome by zhouyu on 2008-09-11 02:47:43 as ** along with 3 people wisdom_love guhjy inesdesantiago
  • ChIP-seq: welcome to the new frontier
    Nature Methods, Vol. 4, No. 8., pp. 613-614.
    by Elaine R Mardis
    posted to method chip-seq chip by zhlei on 2008-09-29 17:38:52 as ** along with 3 people giovenko sleepingcell slevy03
  • Temporal profile of estrogen-dependent gene expression in LHRH-producing GT1-7 cells.
    Neurochemistry international (25 November 2008)
    by Patricia Varju, Ken C C Chang, Erik Hrabovszky, István Merchenthaler, Zsolt Liposits
    posted to thesis method measurement gene-expression estrogen assay by Zephyrus on 2008-12-17 22:50:44 as **
  • The significance of circulating epithelial cells in Breast Cancer patients by a novel negative selection method
    Breast Cancer Research and Treatment, Vol. 111, No. 2. (2008), pp. 355-364.
    by Katherine Tkaczuk, Olga Goloubeva, Nancy Tait, Faye Feldman, Ming Tan, Zhao-Ping Lum, Stephen Lesko, David Van Echo, Paul Ts’o
    posted to method ctc circulation cancer breast by Zephyrus on 2008-11-28 23:39:11 as **
  • notes Estrogen receptor alpha (ERalpha) mRNA copy numbers in immunohistochemically positive-, and negative breast cancer tissues
    BMC Cancer, Vol. 7 (28 March 2007), 56.
    by Indira Poola, Qingqi Yue
    posted to validation tissue receptor method measurement ihc estrogen cancer breast by Zephyrus on 2008-11-20 04:37:50 as ** along with 1 person jfr
  • Information systems security design methods: implications for information systems development
    ACM Computing Surveys, Vol. 25, No. 4. (December 1993), pp. 375-414.
    by Richard Baskerville
    posted to design method security by zemeigo on 2005-07-27 08:49:19 as ** along with 2 people hkl dhein1030
  • Efficient combination of multiple word models for improved sequence comparison.
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2529-2533.
    by X Huang, L Ye, HH Chou, IH Yang, KM Chao
    posted to 321 cited combination method by yoanjacquemin on 2008-02-11 09:57:43 as **
  • Accurate, Dense, and Robust Multi-View Stereopsis
    Computer Vision and Pattern Recognition, 2007. CVPR '07. IEEE Conference on (2007), pp. 1-8.
    by Y Furukawa, J Ponce
    posted to patch-based method by yellowpoplar on 2008-12-08 05:10:53 as read along with 2 people assad79 iansimon
  • Yeast-based functional genomics and proteomics technologies: the first 15 years and beyond.
    Biotechniques, Vol. 40, No. 5. (May 2006), pp. 625-644.
    by B Suter, D Auerbach, I Stagljar
    posted to method yeast by yeastyboy on 2006-11-19 09:32:39 as read along with 3 people guhjy Dualsystems bootsy
  • Mass spectrometry-based functional proteomics: from molecular machines to protein networks
    Nat Meth, Vol. 4, No. 10. (October 2007), pp. 807-815.
    by Thomas Kocher, Giulio Superti-Furga
    posted to interaction maspit mass method protein spectrometry by yeastyboy on 2007-10-16 14:56:20 as *** along with 2 people Scis0000002 guhjy
  • Heat-inducible autolytic vector for high-throughput screening.
    Biotechniques, Vol. 41, No. 3. (September 2006), pp. 319-323.
    by L Xu, S Li, C Ren, Z Cai, Z Lin
    posted to autolytic expression method protein by yeastyboy on 2006-12-01 09:10:35 as **
  • Simple one-week method to construct gene-targeting vectors: application to production of human knockout cell lines.
    Biotechniques, Vol. 41, No. 3. (September 2006), pp. 311-316.
    by S Iiizumi, Y Nomura, S So, K Uegaki, K Aoki, K Shibahara, N Adachi, H Koyama
    posted to cells es gene method targeting by yeastyboy on 2006-11-20 16:03:20 as *** along with 2 people guhjy shimi002
  • MAGIC, an in vivo genetic method for the rapid construction of recombinant DNA molecules
    Nature Genetics, Vol. 37, No. 3. (30 January 2005), pp. 311-319.
    by Mamie Z Li, Stephen J Elledge
    posted to cloning in method recombination vivo by yeastyboy on 2006-11-19 10:02:14 as ***** along with 1 person guhjy
  • There is a virus going around
    Nature Methods, Vol. 5, No. 1., pp. 6-7.
    by Katherine Stevens
    posted to method by yavanna on 2008-01-04 12:33:18 as ***
  • Detection of microRNAs by Northern blot analyses using LNA probes.
    Methods, Vol. 43, No. 2. (October 2007), pp. 140-145.
    by E Várallyay, J Burgyán, Z Havelda
    posted to lna method mirna by yavanna on 2008-01-01 03:36:49 as ** along with 1 person guhjy
  • A Bayesian truth serum for subjective data.
    Science, Vol. 306, No. 5695. (15 October 2004), pp. 462-466.
    by D Prelec
    posted to datamining method review statistics by Yanno on 2006-02-03 11:59:25 as ** along with 12 people and 4 groups klouie stefanherzog jrw garyfeng schaal Borelli ddahlem eibin proportional suizan SamMartin quianominorleo Glimcher_Lab ReadingLab NoncommutativeGeometry ACS-Basel
  • A linguistic model for the rational design of antimicrobial peptides
    Nature, Vol. 443, No. 7113., pp. 867-869.
    by Christopher Loose, Kyle Jensen, Isidore Rigoutsos, Gregory Stephanopoulos
    posted to bioactive disease method naturalproducts peptide by Yanno on 2006-10-19 17:18:05 as read along with 9 people and 1 group apostola niallhaslam okarsligil dayjm mtagaya madhadron pjkiley shabib loison Bioinformatics
  • Simple bioseparations using self-cleaving elastin-like polypeptide tags
    Nature Methods, Vol. 2, No. 9. (02 August 2005), pp. 659-662.
    by Mahmoud R Banki, Liang Feng, David W Wood
    posted to method proteomics purification by Yanno on 2006-08-28 15:00:13 as read
  • Target discovery in small-molecule cell-based screens by in situ proteome reactivity profiling
    Nature Biotechnology, Vol. 23, No. 10. (02 October 2005), pp. 1303-1307.
    by Michael J Evans, Alan Saghatelian, Erik J Sorensen, Benjamin F Cravatt
    posted to method targetbeads by Yanno on 2006-05-30 15:26:19 as read
  • A New Data Analysis Method to Determine Binding Constants of Small Molecules to Proteins Using Equilibrium Analytical Ultracentrifugation with Absorption Optics
    Analytical Biochemistry, Vol. 299, No. 1. (01 December 2001), pp. 98-107.
    by Michelle Arkin, J Lear
    posted to chemical method by Yanno on 2006-05-30 15:28:10 as read
  • Predicting aqueous solubility from structure
    Drug Discovery Today, Vol. 10, No. 4. (15 February 2005), pp. 289-295.
    by John S Delaney
    posted to chemoinformatics method review by Yanno on 2007-11-16 14:36:00 as read
  • Integrating high-content screening and ligand-target prediction to identify mechanism of action.
    Nat Chem Biol, Vol. 4, No. 1. (January 2008), pp. 59-68.
    by DW Young, A Bender, J Hoyt, E McWhinnie, GW Chirn, CY Tao, JA Tallarico, M Labow, JL Jenkins, TJ Mitchison, Y Feng
    posted to chemoinformatics datamining hcs method statistics by Yanno on 2007-12-20 14:55:57 as read along with 3 people guhjy kuhn kengg
  • Oncogenic pathway signatures in human cancers as a guide to targeted therapies
    Nature (06 November 2005)
    by Andrea H Bild, Guang Yao, Jeffrey T Chang, Quanli Wang, Anil Potti, Dawn Chasse, Mary-Beth Joshi, David Harpole, Johnathan M Lancaster, Andrew Berchuck, John A Olson, Jeffrey R Marks, Holly K Dressman, Mike West, Joseph R Nevins
    posted to cancer datamining method networks statistics by Yanno on 2006-06-09 13:02:09 as read along with 11 people guhjy kentsis mfenner ajeffs tuck maryee eckart_bindewald frohike Ao_Li2007 waghsk srp33
  • Alternative Statistical Parameter for High-Throughput Screening Assay Quality Assessment
    J Biomol Screen, Vol. 12, No. 2. (1 March 2007), pp. 229-234.
    by Yunxia Sui, Zhijin Wu
    posted to hts method statistics by Yanno on 2007-05-15 08:46:41 as read
  • BEAMing: single-molecule PCR on microparticles in water-in-oil emulsions
    Nature Methods, Vol. 3, No. 7., pp. 551-559.
    by Frank Diehl, Meng Li, Yiping He, Kenneth W Kinzler, Bert Vogelstein, Devin Dressman
    posted to diagnostics hcs hts method molecularbiology by Yanno on 2006-08-29 10:27:41 as read along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Semi-supervised learning for peptide identification from shotgun proteomics datasets
    Nature Methods, Vol. 4, No. 11. (21 October 2007), pp. 923-925.
    by Lukas Käll, Jesse D Canterbury, Jason Weston, William S Noble, Michael J Maccoss
    posted to ms method by Yanno on 2008-10-20 14:24:57 as read along with 2 people tmmurali nedwards
  • Modification of Kolmogorov-Smirnov Test for DNA Content Data Analysis Through Distribution Alignment.
    Assay Drug Dev Technol (16 October 2007)
    by Shuguang Huang, Adeline A A Yeo, Shuyu Dan D Li
    posted to hcs hts method statistics by Yanno on 2007-11-12 17:27:55 as read
  • Quantitative mouse brain proteomics using culture-derived isotope tags as internal standards
    Nature Biotechnology, Vol. 23, No. 5. (17 April 2005), pp. 617-621.
    by Yasushi Ishihama, Toshitaka Sato, Tsuyoshi Tabata, Norimasa Miyamoto, Koji Sagane, Takeshi Nagasu, Yoshiya Oda
    posted to isotope method ms quantification by Yanno on 2005-10-18 16:56:19 as read
  • Epitope mapping of antibodies using bacterial surface display
    Nature Methods, Vol. 5, No. 12. (23 November 2008), pp. 1039-1045.
    by Johan Rockberg, John Löfblom, Barbara Hjelm, Mathias Uhl￩n, Stefan Ståhl
    posted to screening proteomics method by Yanno on 2009-01-09 15:19:43 as read along with 1 person niallhaslam
  • High-content single-cell drug screening with phosphospecific flow cytometry.
    Nat Chem Biol, Vol. 4, No. 2. (February 2008), pp. 132-142.
    by PO Krutzik, JM Crane, MR Clutter, GP Nolan
    posted to drugdiscovery method screening statistics by Yanno on 2008-01-23 13:38:20 as read along with 2 people kengg guhjy
  • Protein-protein interaction networks and biology—what's the connection?
    Nature Biotechnology, Vol. 26, No. 1., pp. 69-72.
    by Luke Hakes, John W Pinney, David L Robertson, Simon C Lovell
    posted to method networks reference review statistics by Yanno on 2008-02-18 08:32:46 as read along with 15 people and 1 group guhjy tmmurali jfr balicea dullhunk neils mikaelhuss cjeans nedwards biehl shikin mclarenv Yumyai paolomarcatili zdai GeneGo
  • Decision tree–driven tandem mass spectrometry for shotgun proteomics
    Nature Methods, Vol. 5, No. 11. (19 October 2008), pp. 959-964.
    by Danielle L Swaney, Graeme C Mcalister, Joshua J Coon
    posted to reference ms method by Yanno on 2009-01-09 15:16:09 as read along with 1 person guhjy
  • Seeing is believing? A beginners' guide to practical pitfalls in image acquisition
    J. Cell Biol., Vol. 172, No. 1. (3 January 2006), pp. 9-18.
    by Alison J North
    posted to fluorescent method microscopy review by Yanno on 2006-03-06 09:12:16 as read along with 8 people and 1 group willie_gt ts3435 Ayest madhadron lmcf rodney emmahe electricsbm Kopelman_Group
  • High-throughput kinase assays with protein substrates using fluorescent polymer superquenching.
    BMC Biotechnol, Vol. 5, No. 1. (31 May 2005)
    by F Rininsland, C Stankewicz, W Weatherford, D McBranch
    posted to assay fluorescent kinase method by Yanno on 2006-01-27 13:47:26 as read
  • Getting Started in Probabilistic Graphical Models
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e252.
    by Edoardo M Airoldi
    posted to method statistics by Yanno on 2007-12-18 10:49:36 as read along with 6 people kengg axelon ryanraaum heliopais mingzhi Ema
  • Comparisons and validation of statistical clustering techniques for microarray gene expression data.
    Bioinformatics, Vol. 19, No. 4. (1 March 2003), pp. 459-466.
    by S Datta, S Datta
    posted to datamining method statistics by Yanno on 2006-02-01 11:56:45 as *** along with 6 people ujh textoris tvdbulck bertelsen echsberde dps
  • How does gene expression clustering work?
    Nature Biotechnology, Vol. 23, No. 12., pp. 1499-1501.
    by Patrik D'Haeseleer
    posted to datamining method statistics by Yanno on 2006-02-01 11:50:36 as read along with 4 people and 1 group okarsligil sesejun tabu renatomilani Bioinformatics
  • Functional interrogation of the kinome using nucleotide acyl phosphates.
    Biochemistry, Vol. 46, No. 2. (16 January 2007), pp. 350-358.
    by MP Patricelli, AK Szardenings, M Liyanage, TK Nomanbhoy, M Wu, H Weissig, A Aban, D Chun, S Tanner, JW Kozarich
    posted to kinase method proteomics targetbeads by Yanno on 2007-11-12 12:21:06 as read along with 1 person guhjy
  • Amplification of complex gene libraries by emulsion PCR
    Nature Methods, Vol. 3, No. 7., pp. 545-550.
    by Richard Williams, Sergio G Peisajovich, Oliver J Miller, Shlomo Magdassi, Dan S Tawfik, Andrew D Griffiths
    posted to diagnostics hcs hts method molecularbiology by Yanno on 2006-08-29 10:07:15 as read along with 2 people and 2 groups dchughes guhjy G4ID Genetics-of-Gambling
  • Gini Coefficient: A New Way To Express Selectivity of Kinase Inhibitors against a Family of Kinases
    J. Med. Chem., Vol. 50, No. 23. (15 November 2007), pp. 5773-5779.
    by PP Graczyk
    posted to kinase method proteomics statistics by Yanno on 2008-01-04 17:46:05 as read along with 1 person daevans
  • High-throughput assays for promiscuous inhibitors.
    Nat Chem Biol, Vol. 1, No. 3. (August 2005), pp. 146-148.
    by BY Feng, A Shelat, TN Doman, RK Guy, BK Shoichet
    posted to drugdiscovery inhibitor method by Yanno on 2006-05-28 17:25:16 as read
  • A Simple Statistical Parameter for Use in Evaluation and Validation of High Throughput Screening Assays.
    J Biomol Screen, Vol. 4, No. 2. (1999), pp. 67-73.
    by JH Zhang, TD Chung, KR Oldenburg
    posted to method statistics by Yanno on 2006-01-27 14:00:42 as *** along with 1 person jxl
  • Mining Association Rules between Sets of Items in Large Databases
    (FebruaryJune--FebruaryAugust~ 1993), pp. 207-216.
    by Rakesh Agrawal, Tomasz Imielinski, Arun N Swami
    edited by Peter Buneman, Sushil Jajodia
    posted to datamining method by Yanno on 2007-11-22 12:11:12 as read along with 12 people michaelmampaey radical bigga tetsus tvdbulck dolhani abonchen pollaeng amsantos imrchen conley gvdh
  • Kernel methods for in silico chemogenomics
    ArXiv e-prints, Vol. 709 (September 2007)
    by L Jacob, JP Vert
    posted to chemoinformatics datamining method ressource by Yanno on 2007-10-30 16:00:41 as read along with 1 person Scis0000002
  • Encoded self-assembling chemical libraries
    Nat Biotech, Vol. 22, No. 5. (May 2004), pp. 568-574.
    by Samu Melkko, Jorg Scheuermann, Christoph E Dumelin, Dario Neri
    posted to chemical drugdiscovery library method by Yanno on 2005-11-24 10:27:51 as read
  • High-throughput cloning and expression in recalcitrant bacteria
    Nat Meth, Vol. 4, No. 9. (2007), pp. 705-707.
    by Eric R Geertsma, Bert Poolman
    posted to method molecularbiology by Yanno on 2007-09-12 12:22:42 as read along with 3 people Vincent_Rouilly guhjy zwang
  • Inference in Bayesian networks
    Nature Biotechnology, Vol. 24, No. 1., pp. 51-53.
    by Chris J Needham, James R Bradford, Andrew J Bulpitt, David R Westhead
    posted to datamining method statistics by Yanno on 2006-02-01 11:59:32 as *** along with 10 people and 3 groups jrw garyfeng okarsligil Borelli ddahlem lujiec kozlak jo_davies quianominorleo Pragmatist ReadingLab Bioinformatics ThinkBridge
  • High-resolution functional proteomics by active-site peptide profiling.
    Proc Natl Acad Sci U S A, Vol. 102, No. 14. (5 April 2005), pp. 4996-5001.
    by ES Okerberg, J Wu, B Zhang, B Samii, K Blackford, DT Winn, KR Shreder, JJ Burbaum, MP Patricelli
    posted to method proteomics targetbeads by Yanno on 2007-11-12 12:20:53 as read
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