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Tag methods [965 articles]

Recent papers classified by the tag methods.
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  • Using the Experience Sampling Method to Evaluate Ubicomp Applications
    IEEE Pervasive Computing, Vol. 2, No. 2. (April 2003), pp. 24-31.
    by Sunny Consolvo, Miriam Walker
    posted to chi experience hci methods sampling ubicomp by zpousman on 2005-09-19 20:30:35 as read along with 4 people locatellimp hansjoergmueller marcela haveuheard
  • Alignment of protein sequences by their profiles.
    Protein Sci, Vol. 13, No. 4. (April 2004), pp. 1071-1087.
    by MA Marti-Renom, MS Madhusudhan, A Sali
    posted to alignment evolution methods multiple by zmasek on 2006-07-25 20:00:36 as ** along with 4 people and 2 groups pjcite j3xucite marcius granujilla BioinfoCIPF SGU-CIPF
  • Evaluation of iterative alignment algorithms for multiple alignment
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1408-1414.
    by Iain M Wallace, O'Sullivan Orla, Desmond G Higgins
    posted to alignment evolution methods multiple by zmasek on 2006-07-25 19:49:39 as ** along with 1 person Md_2007
  • A Hidden Markov Model approach to variation among sites in rate of evolution.
    Mol Biol Evol, Vol. 13, No. 1. (January 1996), pp. 93-104.
    by J Felsenstein, GA Churchill
    posted to evolution methods ml by zmasek on 2006-07-28 21:19:24 as ** along with 4 people alessandroparini balicea gennaro tale
  • Homology-extended sequence alignment
    Nucleic Acids Research, Vol. 33, No. 3. (2005), pp. 816-824.
    by VA Simossis, J Kleinjung, J Heringa
    posted to alignment evolution methods multiple by zmasek on 2006-07-25 19:58:50 as **
  • A comprehensive comparison of multiple sequence alignment programs
    Nucl. Acids Res., Vol. 27, No. 13. (1 July 1999), pp. 2682-2690.
    by Jd Thompson, F Plewniak, O Poch
    posted to alignment evolution methods multiple sequence by zmasek on 2006-07-27 04:02:42 as ** along with 2 people yylin treangen
  • Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone.
    Mol Biol Evol, Vol. 22, No. 10. (October 2005), pp. 1948-1963.
    by J Leebens-Mack, LA Raubeson, L Cui, JV Kuehl, MH Fourcade, TW Chumley, JL Boore, RK Jansen, CW depamphilis
    posted to evolution methods by zmasek on 2006-07-25 20:09:51 as ** along with 1 person aprasad
  • Overview of commonly used bioinformatics methods and their applications.
    Ann N Y Acad Sci, Vol. 1020 (May 2004), pp. 10-21.
    by IM Kapetanovic, S Rosenfeld, G Izmirlian
    posted to bioinformatics methods by ziquje on 2005-05-26 19:27:34 as ***** along with 1 person guhjy
  • Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data.
    Nucleic acids research (7 May 2008)
    by Alexander E E Ivliev, Peter A C A 't Hoen, Michel P P Villerius, Johan T T den Dunnen, Bernd W W Brandt
    posted to tools statistics microarray methods data-management cancer-crosstalk by Zephyrus on 2008-11-09 16:15:41 as ** along with 3 people and 1 group jfr guhjy zhouyu Roswell Cancer Crosstalk
  • Gene–environment interactions for complex traits: definitions, methodological requirements and challenges
    European Journal of Human Genetics, Vol. aop, No. current.
    by Astrid Dempfle, André Scherag, Rebecca Hein, Lars Beckmann, Jenny Chang-Claude, Helmut Schäfer
    posted to review primer methods interaction gene-environment cancer-crosstalk by Zephyrus on 2008-10-06 02:57:26 as ** along with 2 people and 1 group misonneh guhjy Roswell Cancer Crosstalk
  • Why most published research findings are false.
    PLoS Med, Vol. 2, No. 8. (August 2005)
    by JP Ioannidis
    posted to methods interesting cancer-crosstalk by Zephyrus on 2008-09-17 16:37:33 as ** along with 45 people and 6 groups daforerog kristinchapman FeltonM7675 pengchy ajaymalik gbodner neteler mixedman rklancer guhjy sebpaquet garyfeng monod Borelli jmeppley chad_davis Najamuddin irinas indigoviolet mwyarbro ddahlem dullhunk madhadron balabu jiyu msierk Imat lmi_swap chenlc03 biblio24 pratap OriginalLurch cjeans feipan arne suizan jasonbobe austin lonettma buggle dnugent Malc elsbury shoshin achinerarias UCD SILS IS40340 Research Practice Roswell Cancer Crosstalk ReadingLab EisenLab Sciences_communication_societe dIEMoSIRIS
  • EMERGING AND RE-EMERGING INFECTIOUS DISEASES: The Third Epidemiologic Transition
    Annual Review of Anthropology, Vol. 27, No. 1. (1998), pp. 247-271.
    by Ronald Barrett, Christopher W Kuzawa, Thomas Mcdade, George J Armelagos
    posted to review read methods evolution epidemiology by Zephyrus on 2008-11-09 16:30:15 as ** along with 1 group R.E.A.D
  • What are decision trees?
    Nature Biotechnology, Vol. 26, No. 9., pp. 1011-1013.
    by Carl Kingsford, Steven L Salzberg
    posted to methods statistics primer decision-trees cancer-crosstalk by Zephyrus on 2008-09-12 15:35:37 as ** along with 14 people and 2 groups Yanno A_Olympia jfr yzlab ptrobajo chrisamiller markusd druvus brianb dullhunk sjcockell zwang GeeSharpMinor neils logics of knowledge Roswell Cancer Crosstalk
  • The evolution of trade-offs: where are we?
    Journal of Evolutionary Biology, Vol. 20, No. 2. (March 2007), pp. 433-447.
    by DA Roff, DJ Fairbairn
    posted to review read model methods evolution epidemiology by Zephyrus on 2008-11-09 16:21:36 as ** along with 2 people and 1 group mullonc maren R.E.A.D
  • Self-reported illness and birth weight in the Philippines: Implications for hypotheses of adaptive fetal plasticity
    American Journal of Human Biology, Vol. 20, No. 5. (2008), pp. 538-544.
    by Dominique Heinke, Christopher W Kuzawa
    posted to trait read methods measurement height evolution evol-methods by Zephyrus on 2008-11-09 22:06:11 as ** along with 1 group R.E.A.D
  • notes Big data: Distilling meaning from data
    Nature, Vol. 455, No. 7209. (2008), pp. 30-30.
    by Felice Frankel, Rosalind Reid
    posted to visualization methods dags cancer-crosstalk big-data by Zephyrus on 2008-09-09 09:31:50 as ** along with 8 people and 1 group atphan silberbauer ianturton amarois applebyb fgibson dullhunk jandot Roswell Cancer Crosstalk
  • Treg Potency Assay: Suppression of T Cell Cytokine Expression in Response to T Cell Specific Antigenic Stimulation of Autologous PBMC
    Clinical Immunology, Vol. 123 (2007), pp. S120-S120.
    by S Ghanekar, J Ruitenberg
    posted to treg potency new-direction methods assay by Zephyrus on 2008-12-15 09:33:42 as **
  • Genome-wide mapping and characterization of hypomethylated sites in human tissues and breast cancer cell lines.
    Genome research, Vol. 18, No. 5. (May 2008), pp. 791-801.
    by YJ Shann, C Cheng, CH Chiao, DT Chen, PH Li, MT Hsu
    posted to methods mapping hypomethylation gwas epigenetics cancer breast by Zephyrus on 2008-11-07 09:49:54 as ** along with 2 people and 1 group jfr inesdesantiago Breast Cancer Reading Club
  • Getting Started in Computational Immunology
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000128.
    by Steven H Kleinstein
    posted to methods statistics primer immunology cancer-crosstalk by Zephyrus on 2008-09-12 15:40:52 as ** along with 10 people and 2 groups akraemer najwvandijk nuin barry reyez dakelley GeeSharpMinor rebeccamancy AbnerCYH jjray Roswell Cancer Crosstalk Bioinformatics
  • Calculating age-adjusted cancer survival estimates when age-specific data are sparse: an empirical evaluation of various methods
    British Journal of Cancer, Vol. aop, No. current. (24 January 2006)
    by A Gondos, DM Parkin, E Chokunonga, H Brenner
    posted to survival methods cancer age-adjusted by Zephyrus on 2008-11-30 20:44:28 as **
  • Systematic review: T-cell-based assays for the diagnosis of latent tuberculosis infection: an update.
    Annals of internal medicine, Vol. 149, No. 3. (5 August 2008), pp. 177-184.
    by M Pai, A Zwerling, D Menzies
    posted to tb t-cells methods interferon immunology assay by Zephyrus on 2009-01-04 03:28:21 as ** along with 1 person guhjy
  • A comparison of two methods for estimating odds ratios: Results from the National Health Survey
    BMC Medical Research Methodology, Vol. 8 (25 November 2008), 78.
    by Enayatollah, Behjat Seifi
    posted to statistics review odds-ratio methods cancer-crosstalk by Zephyrus on 2009-01-04 03:27:43 as ** along with 2 people and 1 group guhjy kharke Roswell Cancer Crosstalk
  • Genotype-phenotype databases: challenges and solutions for the post-genomic era
    Nat Rev Genet, Vol. 10, No. 1. (January 2009), pp. 9-18.
    by Gudmundur A Thorisson, Juha Muilu, Anthony J Brookes
    posted to review phenotype perspective methods genotype database by Zephyrus on 2008-12-25 14:40:43 as ** along with 9 people and 1 group dullhunk nuin balicea dbk misonneh Nineveh guhjy pkonings paszkows Roswell Cancer Crosstalk
  • notes Genomic copy number alterations as predictive markers of systemic recurrence in breast cancer.
    International journal of cancer. Journal international du cancer, Vol. 123, No. 8. (15 October 2008), pp. 1807-1815.
    by KT Hwang, W Han, J Cho, JW Lee, E Ko, EK Kim, SY Jung, EM Jeong, JY Bae, JJ Kang, SJ Yang, SW Kim, DY Noh
    posted to prediction model methods recurrence journal-club cnv cancer-crosstalk cancer breast by Zephyrus on 2008-09-15 14:57:21 as ** along with 1 group Breast Cancer Reading Club
  • Discussion: Statistical Literacy: Implications for Teaching, Research, and Practice
    International Statistical Review, Vol. 70, No. 1. (2002), pp. 32-36.
    by Deborah J Rumsey
    posted to methods statistics teaching by Zephyrus on 2008-08-05 17:32:36 as **
  • Second primary breast cancers following an initial diagnosis of cancer in one breast: a methodological issue
    British Journal of Cancer, Vol. aop, No. current. (14 October 2008)
    by D Robinson
    posted to recurrence methods letter cancer breast by Zephyrus on 2008-12-07 16:26:57 as ** along with 1 group Breast Cancer Reading Club
  • LRpath: A logistic regression approach for identifying enriched biological groups in gene expression data
    Bioinformatics (27 November 2008), btn592.
    by Maureen A Sartor, George D Leikauf, Mario Medvedovic
    posted to regression microarray methods logistic gene-expression cancer-crosstalk bioinformatics by Zephyrus on 2008-12-07 19:04:14 as ** along with 1 person and 1 group renatomilani Roswell Cancer Crosstalk
  • Identification and quantification of proteins differentially secreted by a pair of normal and malignant breast-cancer cell lines.
    Proteomics (3 December 2008)
    by Xiquan Liang, Jarkko Huuskonen, Mahbod Hajivandi, Raul Manzanedo, Paul Predki, Joseph R R Amshey, R Marshall M Pope
    posted to proteomics molecular methods cancer breast by Zephyrus on 2008-12-07 01:55:34 as ** along with 1 group Breast Cancer Reading Club
  • Molecular Imaging, an Innovative Methodology for Whole-Body Profiling of Endocrine Disrupter Action
    Toxicol. Sci., Vol. 106, No. 2. (1 December 2008), pp. 304-311.
    by Diego Di Lorenzo, Gianpaolo Rando, Paolo Ciana, Adriana Maggi
    posted to thesis methods measurement imaging environment endocrine disruption by Zephyrus on 2008-11-24 03:40:06 as **
  • Microarray-based gene set analysis: a comparison of current methods
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Sarah Song, Michael Black
    posted to review microarray methods gene-expression comparison by Zephyrus on 2008-12-25 14:54:11 as ** along with 13 people and 1 group lptolik balicea daforerog irinamohorianu dswan shikin nuin hersh006 behindtherabbit colinDotAIBN druvus barriot GeeSharpMinor Roswell Cancer Crosstalk
  • Human Health and Endocrine Disruption: A Simple Multicriteria Framework for the Qualitative Assessment of End Point Specific Risks in a Context of Scientific Uncertainty
    Toxicol. Sci., Vol. 98, No. 2. (1 August 2007), pp. 332-347.
    by Olwenn V Martin, John N Lester, Nikolaos Voulvoulis, Alan R Boobis
    posted to methods epidemiology endocrine disruption assessment by Zephyrus on 2008-11-30 20:00:49 as **
  • Detecting the Genetic Signature of Natural Selection in Human Populations: Models, Methods, and Data
    Annual Review of Anthropology, Vol. 37, No. 1. (2008), pp. 197-217.
    by Angela M Hancock, Anna Di Rienzo
    posted to selection review read methods genetics evolution by Zephyrus on 2008-12-11 10:23:35 as ** along with 1 group R.E.A.D
  • Flow Cytometry Study of Leukocyte Function: Analytical Comparison of Methods and their Applicability to Clinical Research
    Current Medicinal Chemistry, Vol. 15, No. 6. (March 2008), pp. 596-603.
    by Matteucci, , Giampietro,
    posted to thesis protocol methods leukocyte flow-cytometry analysis by Zephyrus on 2008-11-03 22:52:02 as **
  • Exploring the Underlying Hormonal Mechanisms of Prenatal Risk Factors for Breast Cancer: A Review and Commentary
    Cancer Epidemiol Biomarkers Prev, Vol. 16, No. 9. (1 September 2007), pp. 1700-1712.
    by Rebecca Troisi, Nancy Potischman, Robert N Hoover
    posted to biomarker review read prenatal methods measurement exposure cancer breast assessment by Zephyrus on 2008-11-10 07:51:05 as ** along with 2 groups R.E.A.D Breast Cancer Reading Club
  • KEGG spider: interpretation of genomics data in the context of the global gene metabolic network
    Genome Biology, Vol. 9, No. 12. (2008)
    by Alexey Antonov, Sabine Dietmann, Hans Mewes
    posted to tools methods genomics genetics database cancer-crosstalk by Zephyrus on 2008-12-25 14:39:05 as ** along with 7 people and 1 group Cortel guhjy neils cmzmasek fgibson dullhunk druvus Roswell Cancer Crosstalk
  • Statistical power and estimation of the number of required subjects for a study based on the t-test: a surgeon's primer.
    The Journal of surgical research, Vol. 126, No. 2. (15 June 2005), pp. 149-159.
    by EH Livingston, L Cassidy
    posted to thesis statistics primer power methods by Zephyrus on 2009-01-04 03:25:34 as ** along with 1 person and 1 group guhjy Roswell Cancer Crosstalk
  • Complementary hierarchical clustering
    Biostat, Vol. 9, No. 3. (1 July 2008), pp. 467-483.
    by Gen Nowak, Robert Tibshirani
    posted to statistics model microarray methods gene-expression data-analysis cancer-crosstalk by Zephyrus on 2008-11-09 16:20:08 as ** along with 2 people and 1 group jfr djkt Roswell Cancer Crosstalk
  • Evaluation of data-dependent versus targeted shotgun proteomic approaches for monitoring transcription factor expression in breast cancer.
    Journal of proteome research, Vol. 7, No. 4. (April 2008), pp. 1529-1541.
    by C Sandhu, JA Hewel, G Badis, S Talukder, J Liu, TR Hughes, A Emili
    posted to transcription proteomics methods cancer breast by Zephyrus on 2008-11-06 18:15:13 as ** along with 1 person and 1 group guhjy Breast Cancer Reading Club
  • Identification of estrogen-responsive proteins in MCF-7 human breast cancer cells using label-free quantitative proteomics
    PROTEOMICS, Vol. 8, No. 10. (2008), pp. 1987-2005.
    by Zheying Zhu, Alan R Boobis, Robert J Edwards
    posted to proteomics methods mcf7 estrogen cancer breast by Zephyrus on 2009-01-04 23:43:05 as **
  • Significance, detection and markers of disseminated breast cancer cells
    Endocr Relat Cancer, Vol. 13, No. 4. (1 December 2006), pp. 1033-1067.
    by Marc Lacroix
    posted to thesis review methods dtc cancer breast background by Zephyrus on 2008-11-28 23:28:56 as **
  • Detecting Gene-Environment Interactions Using a Combined Case-Only and Case-Control Approach.
    American journal of epidemiology (13 December 2008)
    by Dalin Li, David V V Conti
    posted to review primer methods interaction genetics gene-environment case-only case-control by Zephyrus on 2009-01-04 03:22:03 as ** along with 1 person and 1 group guhjy Roswell Cancer Crosstalk
  • notes EDWARD BUCKLER PROFILE: Romping Through Maize Diversity
    Science, Vol. 322, No. 5898. (3 October 2008), pp. 40-41.
    by Elizabeth Pennisi
    posted to genomics wheat sequencing methods cancer-crosstalk by Zephyrus on 2008-10-03 03:58:11 as ** along with 1 group Roswell Cancer Crosstalk
  • Key Issues in Conducting a Meta-Analysis of Gene Expression Microarray Datasets
    PLoS Medicine, Vol. 5, No. 9. (1 September 2008), e184.
    by Adaikalavan Ramasamy, Adrian Mondry, Chris C Holmes, Douglas G Altman
    posted to review primer microarray methods meta-analysis gene-expression data-analysis cancer-crosstalk by Zephyrus on 2008-12-25 14:59:22 as ** along with 6 people and 1 group shikin druvus guhjy aviad_work jfr ptrobajo Roswell Cancer Crosstalk
  • Should epidemiologists always publish their results? Yes, almost always.
    Epidemiology (Cambridge, Mass.), Vol. 19, No. 4. (July 2008), pp. 532-533.
    by L Kheifets, J Olsen
    posted to publishing opinion methods guidelines epidemiology cancer-crosstalk by Zephyrus on 2008-10-16 20:02:25 as ** along with 1 group Roswell Cancer Crosstalk
  • Problems in testing and risk assessment of endocrine disrupting chemicals with regard to developmental toxicology.
    Chemosphere, Vol. 39, No. 8. (October 1999), pp. 1293-1300.
    by A Mantovani, AV Stazi, C Macrì, F Maranghi, C Ricciardi
    posted to xenoestrogen methods endocrine disruption critique by Zephyrus on 2008-11-30 17:23:29 as **
  • Statistical power calculations.
    Journal of animal science, Vol. 85, No. 13 Suppl. (March 2007)
    by RV Lenth
    posted to thesis statistics review primer power methods by Zephyrus on 2009-01-04 03:24:32 as ** along with 1 person and 1 group guhjy Roswell Cancer Crosstalk
  • Degree-of-spread artefact in the New South Wales Central Cancer Registry
    Australian and New Zealand Journal of Public Health, Vol. 32, No. 5. (2008), pp. 414-416.
    by Helen Barraclough, Stephen Morrell, Maria Arcorace, Heather J Mcelroy, Deborah F Baker
    posted to registry methods epidemiology cancer artefact by Zephyrus on 2008-11-30 19:19:53 as **
  • notes An SNP-guided microRNA map of fifteen common human disorders identifies a consensus disease phenocode aiming at principal components of the nuclear import pathway.
    Cell cycle (Georgetown, Tex.), Vol. 7, No. 16. (15 August 2008), pp. 2570-2583.
    by GV Glinsky
    posted to snp rna microrna methods cancer-crosstalk cancer breast bioinformatics by Zephyrus on 2008-12-07 15:27:47 as ** along with 1 person and 1 group jfr Roswell Cancer Crosstalk
  • Methods for estimating prevalence ratios in cross-sectional studies.
    Revista de saúde pública, Vol. 42, No. 6. (December 2008), pp. 992-998.
    by LM Coutinho, M Scazufca, PR Menezes
    posted to statistics prevalence methods epidemiology cross-sectional by Zephyrus on 2009-01-04 03:26:49 as ** along with 1 person and 1 group guhjy Roswell Cancer Crosstalk
  • Deciphering the molecular basis of breast cancer metastasis with mouse models
    Reviews in Endocrine & Metabolic Disorders, Vol. 8, No. 3. (2007), pp. 199-213.
    by Ann Vernon, Suzanne Bakewell, Lewis Chodosh
    posted to thesis molecular model mice methods metastasis cancer breast background by Zephyrus on 2008-11-29 03:04:14 as **
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