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Tag microarray [879 articles]

Recent papers classified by the tag microarray.
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  • Regulatory networks define phenotypic classes of human stem cell lines
    Nature (24 August 2008)
    by Franz-Josef Müller, Louise C Laurent, Dennis Kostka, Igor Ulitsky, Roy Williams, Christina Lu, In-Hyun Park, Mahendra S Rao, Ron Shamir, Philip H Schwartz, Nils O Schmidt, Jeanne F Loring
    posted to regulation network microarray expression clustering by zwang on 2008-10-16 14:00:26 as ** along with 9 people and 1 group guhjy jfr ajaymalik ptrobajo heliopais wsjames roys tmmurali caseybrown Oxford Virology
  • Ubiquitination screen using protein microarrays for comprehensive identification of Rsp5 substrates in yeast
    Mol Syst Biol, Vol. 3 (5 June 2007)
    by Ronish Gupta, Bart Kus, Christopher Fladd, James Wasmuth, Raffi Tonikian, Sachdev Sidhu, Nevan J Krogan, John Parkinson, Daniela Rotin
    posted to interaction microarray protein yeast by zwang on 2007-06-06 01:20:33 as **
  • Nonlinear differential equation model for quantification of transcriptional regulation applied to microarray data of Saccharomyces cerevisiae
    Nucleic Acids Research, Vol. 35, No. 1. (January 2007), pp. 279-287.
    by Vu, Tra Thi, Vohradsky, Jiri
    posted to microarray regulation transcription yeast by zwang on 2007-04-16 13:48:37 as ** along with 1 person lillo80
  • Assessing the Significance of Conserved Genomic Aberrations Using High Resolution Genomic Microarrays
    PLoS Genetics, Vol. 3, No. 8. (1 August 2007), e143.
    by Mitchell Guttman, Carolyn Mies, Katarzyna Dudycz-Sulicz, Sharon J Diskin, Don A Baldwin, Christian J Stoeckert, Gregory R Grant
    posted to genome microarray by zwang on 2007-09-03 15:17:14 as * along with 3 people and 2 groups jfr rdiaz ealloza Bioinformatics BioinfoCIPF
  • Comparing whole genomes using DNA microarrays
    Nat Rev Genet, Vol. 9, No. 4. (April 2008), pp. 291-302.
    by David Gresham, Maitreya J Dunham, David Botstein
    posted to dna genome microarray by zwang on 2008-03-20 13:03:01 as ** along with 6 people cheyloveday guhjy jo_davies shinetmt giovenko thomaskelder
  • A High-Resolution Root Spatiotemporal Map Reveals Dominant Expression Patterns
    Science, Vol. 318, No. 5851. (2 November 2007), pp. 801-806.
    by Siobhan M Brady, David A Orlando, Ji-Young Lee, Jean Y Wang, Jeremy Koch, Jose R Dinneny, Daniel Mace, Uwe Ohler, Philip N Benfey
    posted to clustering expression fluorescent microarray by zwang on 2007-11-05 14:32:26 as * along with 2 people cjeans kengg
  • Domain-enhanced analysis of microarray data using GO annotations
    Bioinformatics, Vol. 23, No. 10. (15 May 2007), pp. 1225-1234.
    by Jiajun Liu, Jacqueline M Hughes-Oliver, Alan J Menius
    posted to annotation domain microarray by zwang on 2007-05-29 02:25:26 as ** along with 2 people guhjy jfr
  • Advantages and limitations of microarray technology in human cancer.
    Oncogene, Vol. 22, No. 42. (29 September 2003), pp. 6497-6507.
    by G Russo, C Zegar, A Giordano
    posted to bioinformatics microarray by ziquje on 2005-02-17 17:42:08 as ** along with 1 person junehlee
  • Experiments using microarray technology: limitations and standard operating procedures.
    J Endocrinol, Vol. 178, No. 2. (August 2003), pp. 195-204.
    by T Forster, D Roy, P Ghazal
    posted to bioinformatics microarray by ziquje on 2005-02-17 17:36:03 as **
  • Post-analysis follow-up and validation of microarray experiments.
    Nat Genet, Vol. 32 Suppl (December 2002), pp. 509-514.
    by RF Chuaqui, RF Bonner, CJ Best, JW Gillespie, MJ Flaig, SM Hewitt, JL Phillips, DB Krizman, MA Tangrea, M Ahram, WM Linehan, V Knezevic, MR Emmert-Buck
    posted to bioinformatics microarray by ziquje on 2005-02-17 17:33:58 as ** along with 3 people and 1 group mayercd irenas stsaft dbk-lab
  • Diagnostic and prognostic prediction using gene expression profiles in high-dimensional microarray data.
    Br J Cancer, Vol. 89, No. 9. (3 November 2003), pp. 1599-1604.
    by R Simon
    posted to bioinformatics microarray by ziquje on 2005-02-17 17:33:23 as **
  • Navigating gene expression using microarrays--a technology review.
    Nat Cell Biol, Vol. 3, No. 8. (August 2001)
    by A Schulze, J Downward
    posted to bioinformatics microarray by ziquje on 2005-02-17 17:32:23 as ** along with 7 people and 2 groups numata alokm balicea dchughes jo_davies ale mcox G4ID Genetics-of-Gambling
  • The use and analysis of microarray data.
    Nat Rev Drug Discov, Vol. 1, No. 12. (December 2002), pp. 951-960.
    by A Butte
    posted to bioinformatics microarray by ziquje on 2005-02-17 17:31:26 as ** along with 3 people and 1 group irenas numata balicea dbk-lab
  • Gene selection in microarray data: the elephant, the blind men and our algorithms.
    Curr Opin Struct Biol, Vol. 13, No. 3. (June 2003), pp. 370-376.
    by G Stolovitzky
    posted to bioinformatics microarray by ziquje on 2005-02-17 17:35:40 as *****
  • Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data.
    Nucleic acids research (7 May 2008)
    by Alexander E E Ivliev, Peter A C A 't Hoen, Michel P P Villerius, Johan T T den Dunnen, Bernd W W Brandt
    posted to microarray by zhouyu on 2008-05-13 05:47:41 as ** along with 3 people and 1 group Zephyrus jfr guhjy Roswell Cancer Crosstalk
  • MARS: microarray analysis, retrieval, and storage system.
    BMC Bioinformatics, Vol. 6 (2005)
    by M Maurer, R Molidor, A Sturn, J Hartler, H Hackl, G Stocker, A Prokesch, M Scheideler, Z Trajanoski
    posted to microarray by zhouyu on 2008-05-10 04:07:25 as ** along with 1 person guhjy
  • GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor.
    Bioinformatics (12 May 2007)
    by Sean Davis, Paul S S Meltzer
    posted to microarray by zhouyu on 2008-05-10 04:06:48 as ** along with 7 people shikin guhjy jfr ugengma giovenko ablejec bertelsen
  • AMDA: an R package for the automated microarray data analysis
    BMC Bioinformatics, Vol. 7 (06 July 2006), 335.
    by Mattia Pelizzola, Norman Pavelka, Maria Foti, Paola Ricciardi-Castagnoli
    posted to microarray by zhouyu on 2008-05-10 04:05:41 as ** along with 1 person guhjy
  • EzArray: a web-based highly automated Affymetrix expression array data management and analysis system
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Yuerong Zhu, Yuelin Zhu, Wei Xu
    posted to microarray by zhouyu on 2008-05-10 04:08:11 as ** along with 5 people and 1 group Zephyrus guhjy cannin heliopais jfr Roswell Cancer Crosstalk
  • Mining microarray data at NCBI's Gene Expression Omnibus (GEO)*.
    Methods Mol Biol, Vol. 338 (2006), pp. 175-190.
    by T Barrett, R Edgar
    posted to microarray by zhouyu on 2008-05-10 04:12:46 as ** along with 6 people giovenko guhjy frohike waszak hpiwowar ablejec
  • Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package annotationTools
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Alexandre Kuhn, Ruth L Carter, Mauro Delorenzi
    posted to microarray by zhouyu on 2008-05-10 04:09:34 as ** along with 12 people natstreet druvus guhjy jfr balicea dullhunk ghattem RamuAnandakrishnan heliopais ablejec bertelsen sanchezbuelna
  • MicroRNA expression profiles classify human cancers
    Nature, Vol. 435, No. 7043., pp. 834-838.
    by Jun Lu, Gad Getz, Eric A Miska, Ezequiel Alvarez-Saavedra, Justin Lamb, David Peck, Alejandro Sweet-Cordero, Benjamin L Ebert, Raymond H Mak, Adolfo A Ferrando, James R Downing, Tyler Jacks, Robert R Horvitz, Todd R Golub
    posted to microarray by zhouyu on 2008-05-10 04:25:45 as ** along with 12 people and 2 groups cswinburne jfr tmmurali ajeffs tuck mtagaya ealloza frohike capitall maralena giovenko srp33 Bioinformatics microRNA
  • Prediction of the outcome of preoperative chemotherapy in breast cancer by DNA probes that convey information on both complete and non complete responses
    BMC Bioinformatics, Vol. 9 (15 March 2008), 149.
    by Rene Natowicz, Roberto Incitti, Euler G Horta, Benoit Charles, Philippe Guinot, Kai Yan, Charles Coutant, Fabrice Andre, Lajos Pusztai, Roman Rouzier
    posted to signature prognosis prediction microarray chemotherapy cancer breast by Zephyrus on 2008-10-05 20:44:55 as ** along with 3 people jfr henryk69 Natowicz
  • CoPub: a literature-based keyword enrichment tool for microarray data analysis.
    Nucleic acids research (28 April 2008)
    by Raoul Frijters, Bart Heupers, Pieter van V Beek, Maurice Bouwhuis, René van V Schaik, Jacob de D Vlieg, Jan Polman, Wynand Alkema
    posted to tools statistics microarray data-analysis cancer-crosstalk analysis by Zephyrus on 2008-11-09 16:15:01 as ** along with 2 people and 1 group jfr guhjy Roswell Cancer Crosstalk
  • Key Issues in Conducting a Meta-Analysis of Gene Expression Microarray Datasets
    PLoS Medicine, Vol. 5, No. 9. (1 September 2008), e184.
    by Adaikalavan Ramasamy, Adrian Mondry, Chris C Holmes, Douglas G Altman
    posted to review primer microarray methods meta-analysis gene-expression data-analysis cancer-crosstalk by Zephyrus on 2008-12-25 14:59:22 as ** along with 6 people and 1 group shikin druvus guhjy aviad_work jfr ptrobajo Roswell Cancer Crosstalk
  • Gene expression of topoisomerase II alpha (TOP2A) by microarray analysis is highly prognostic in estrogen receptor (ER) positive breast cancer.
    Breast cancer research and treatment (14 March 2008)
    by A Rody, T Karn, E Ruckhäberle, V Müller, M Gehrmann, C Solbach, A Ahr, R Gätje, U Holtrich, M Kaufmann
    posted to top2a receptor prognosis microarray gene-expression estrogen cancer breast by Zephyrus on 2008-10-05 20:43:13 as ** along with 1 person jfr
  • Sparse optimal scoring for multiclass cancer diagnosis and biomarker detection using microarray data.
    Computational biology and chemistry, Vol. 32, No. 6. (December 2008), pp. 417-425.
    by C Leng
    posted to tools statistics signature microarray gene-expression diagnosis cancer-crosstalk cancer biomarker by Zephyrus on 2008-11-03 15:42:36 as ** along with 1 person and 1 group jfr Roswell Cancer Crosstalk
  • Microarray-based gene set analysis: a comparison of current methods
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Sarah Song, Michael Black
    posted to review microarray methods gene-expression comparison by Zephyrus on 2008-12-25 14:54:11 as ** along with 13 people and 1 group lptolik balicea daforerog irinamohorianu dswan shikin nuin hersh006 behindtherabbit colinDotAIBN druvus barriot GeeSharpMinor Roswell Cancer Crosstalk
  • Clinical validation of a customized multiple signature microarray for breast cancer.
    Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 2. (15 January 2008), pp. 461-469.
    by BK Tan, LK Tan, K Yu, PH Tan, M Lee, LH Sii, CY Wong, GH Ho, AW Yeo, PK Chow, HN Koong, WS Yong, DT Lim, LL Ooi, KC Soo, P Tan
    posted to signature validation prognosis prediction microarray clinical cancer breast by Zephyrus on 2008-10-05 20:39:58 as ** along with 1 person jfr
  • Agreement in breast cancer classification between microarray and quantitative reverse transcription PCR from fresh-frozen and formalin-fixed, paraffin-embedded tissues.
    Clinical chemistry, Vol. 53, No. 7. (July 2007), pp. 1273-1279.
    by M Mullins, L Perreard, JF Quackenbush, N Gauthier, S Bayer, M Ellis, J Parker, CM Perou, A Szabo, PS Bernard
    posted to tissue pcr paraffin-embedded microarray fresh-frozen formalin-fixed comparisons cancer breast by Zephyrus on 2008-11-28 14:10:59 as ** along with 1 person and 1 group jfr Breast Cancer Reading Club
  • The use of genomic tools for the molecular understanding of breast cancer and to guide personalized medicine.
    Drug discovery today, Vol. 13, No. 11-12. (June 2008), pp. 481-487.
    by JA Foekens, Y Wang, JW Martens, EM Berns, JG Klijn
    posted to tools review microarray measurement gene-expression cancer-crosstalk cancer breast by Zephyrus on 2008-09-15 23:21:00 as ** along with 2 people and 1 group jfr guhjy Breast Cancer Reading Club
  • LRpath: A logistic regression approach for identifying enriched biological groups in gene expression data
    Bioinformatics (27 November 2008), btn592.
    by Maureen A Sartor, George D Leikauf, Mario Medvedovic
    posted to regression microarray methods logistic gene-expression cancer-crosstalk bioinformatics by Zephyrus on 2008-12-07 19:04:14 as ** along with 1 person and 1 group renatomilani Roswell Cancer Crosstalk
  • Merging microarray data from separate breast cancer studies provides a robust prognostic test
    BMC Bioinformatics, Vol. 9 (27 February 2008), 125.
    by Lei Xu, Aik C Tan, Raimond L Winslow, Donald Geman
    posted to studies prognosis microarray merging cancer breast by Zephyrus on 2008-10-05 20:47:32 as ** along with 5 people laral frohike jfr shigepong chrisamiller
  • Identification of cancer genes using a statistical framework for multiexperiment analysis of nondiscretized array CGH data.
    Nucleic acids research, Vol. 36, No. 2. (February 2008)
    by C Klijn, H Holstege, J de Ridder, X Liu, M Reinders, J Jonkers, L Wessels
    posted to methods statistics microarray genetics cgh cancer breast by Zephyrus on 2008-10-05 21:04:15 as ** along with 2 people rdiaz jfr
  • Complementary hierarchical clustering
    Biostat, Vol. 9, No. 3. (1 July 2008), pp. 467-483.
    by Gen Nowak, Robert Tibshirani
    posted to statistics model microarray methods gene-expression data-analysis cancer-crosstalk by Zephyrus on 2008-11-09 16:20:08 as ** along with 2 people and 1 group jfr djkt Roswell Cancer Crosstalk
  • Meta-analysis of human cancer microarrays reveals GATA3 is integral to the estrogen receptor alpha pathway
    Molecular Cancer, Vol. 7 (04 June 2008), 49.
    by Brian J Wilson, Vincent Giguere
    posted to pathway thesis receptor microarray immunology gata3 estrogen cancer breast by Zephyrus on 2008-10-05 21:00:09 as ** along with 1 person jfr
  • Spectral biclustering of microarray data: coclustering genes and conditions.
    Genome Res, Vol. 13, No. 4. (April 2003), pp. 703-716.
    by Y Kluger, R Basri, JT Chang, M Gerstein
    posted to biclustering data microarray of spectral by yuval on 2005-12-06 20:42:02 as ***** along with 8 people bozdagd rmj001 tuck filippone shigepong dps tvdbulck balicea
  • Rejoinder: whole-culture synchronization cannot, and does not, synchronize cells.
    Trends Biotechnol, Vol. 22, No. 6. (June 2004), pp. 274-276.
    by S Cooper
    posted to cell-synchronisation microarray by yoh on 2006-01-27 11:07:30 as **
  • Is whole-culture synchronization biology's 'perpetual-motion machine'?
    Trends Biotechnol, Vol. 22, No. 6. (June 2004), pp. 266-269.
    by S Cooper
    posted to cell-synchronisation microarray by yoh on 2006-01-27 11:05:53 as **
  • Final words: cell age and cell cycle are unlinked.
    Trends Biotechnol, Vol. 22, No. 6. (June 2004), pp. 277-278.
    by PT Spellman, G Sherlock
    posted to cell-synchronisation microarray by yoh on 2006-01-27 11:08:56 as **
  • Reply: whole-culture synchronization - effective tools for cell cycle studies.
    Trends Biotechnol, Vol. 22, No. 6. (June 2004), pp. 270-273.
    by PT Spellman, G Sherlock
    posted to cell-synchronisation microarray by yoh on 2006-01-27 11:06:47 as **
  • An unsupervised conditional random fields approach for clustering gene expression time series
    Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2467-2473.
    by Chang-Tsun Li, Yinyin Yuan, Roland Wilson
    posted to microarray clustering by yina on 2008-10-26 10:27:34 as ***** along with 3 people jfr weiweiguo guhjy
  • Partial mixture model for tight clustering of gene expression time-course
    BMC Bioinformatics, Vol. 9 (18 June 2008), 287.
    by Yinyin Yuan, Chang-Tsun Li, Roland Wilson
    posted to microarray clustering by yina on 2008-10-26 10:27:59 as **
  • Ontological analysis of gene expression data: current tools, limitations, and open problems.
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3587-3595.
    by P Khatri, S Drăghici
    posted to microarray ontology review tools by yggdrasil on 2008-04-21 10:00:46 as ** along with 12 people and 1 group Stew shikin diamantis Cortel dragonrez macavity1g Garamonfok sgoetz heliopais kristen ellakat marck Bioinformatics - CRUK
  • Fluorescent high-density labeling of DNA: error-free substitution for a normal nucleotide
    Journal of Biotechnology, Vol. 86, No. 3. (13 April 2001), pp. 237-253.
    by Zeno Foldes-Papp, Bernhard Angerer, Waltraud Ankenbauer, Rudolf Rigler
    posted to dutp labeling microarray by yevishere on 2008-01-04 21:28:10 as **
  • Development of a DNA-Labeling System for Array-Based Comparative Genomic Hybridization
    J Biomol Tech, Vol. 16, No. 2. (1 June 2005), pp. 104-111.
    by Pauline T Lieu, Peter Jozsi, Patrick Gilles, Todd Peterson
    posted to dna labeling microarray by yevishere on 2008-01-04 21:11:29 as **
  • Pre-filtering improves reliability of Affymetrix GeneChips results when used to analyze gene expression in complex tissues.
    Mol Cell Probes (28 November 2007)
    by Dario Greco, Damiana Leo, Umberto di Porzio, Carla Perrone Capano, Petri Auvinen
    posted to affymetrix analysis microarray by yevishere on 2008-01-04 00:34:49 as ** along with 1 person Terkko
  • Gene expression profiling and differentiation assessment in primary human hepatocyte cultures, established hepatoma cell lines, and human liver tissues.
    Toxicol Appl Pharmacol, Vol. 222, No. 1. (1 July 2007), pp. 42-56.
    by KM Olsavsky, JL Page, MC Johnson, H Zarbl, SC Strom, CJ Omiecinski
    posted to expression hnf4 microarray by yevishere on 2008-01-03 23:14:38 as **
  • Characterization of three growth hormone-responsive transcription factors preferentially expressed in adult female liver.
    Endocrinology, Vol. 148, No. 7. (July 2007), pp. 3327-3337.
    by EV Laz, MG Holloway, CS Chen, DJ Waxman
    posted to expression hnf4 microarray by yevishere on 2008-01-03 23:20:58 as **
  • Role of human hepatocyte nuclear factor 4alpha in the expression of drug-metabolizing enzymes and transporters in human hepatocytes assessed by use of small interfering RNA.
    Drug Metab Pharmacokinet, Vol. 22, No. 4. (August 2007), pp. 287-298.
    by Y Kamiyama, T Matsubara, K Yoshinari, K Nagata, H Kamimura, Y Yamazoe
    posted to hnf4 microarray targets by yevishere on 2008-01-02 23:36:13 as **
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