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Tag must-read [23 articles]

Recent papers classified by the tag must-read.
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  • Query Chains: Learning to Rank from Implicit Feedback
    by Filip Radlinski, Torsten Joachims
    posted to clickthrough clickthrough_cornell evaluation implicit ml_for_ir multiple_retrievers must-read mustread printed reranking by NicolasNeubauer on 2006-01-09 15:53:20 as read along with 4 people and 1 group ALF damcci student_t kenji_imai ALF
  • Levers and fulcrums: progress in cis-regulatory motif models
    Nature Methods, Vol. 5, No. 4., pp. 297-298.
    by Ewan Birney
    posted to must-read by isimpson on 2008-07-03 13:31:55 as ***** along with 3 people and 2 groups stajich emptyhb pradiptaray EisenLab Berkeley Mycology
  • Drosophila regulatory factor X is necessary for ciliated sensory neuron differentiation.
    Development (Cambridge, England), Vol. 129, No. 23. (December 2002), pp. 5487-5498.
    by R Dubruille, A Laurençon, C Vandaele, E Shishido, M Coulon-Bublex, P Swoboda, P Couble, M Kernan, B Durand
    posted to must-read by isimpson on 2008-11-27 04:07:42 as **
  • Homotypic regulatory clusters in Drosophila.
    Genome Res, Vol. 13, No. 4. (April 2003), pp. 579-588.
    by AP Lifanov, VJ Makeev, AG Nazina, DA Papatsenko
    posted to transcription-regulation must-read motifs motif-discovery database by isimpson on 2008-10-09 10:51:42 as ***** along with 2 people and 1 group indigoviolet tresch EisenLab
  • Ultraconservation identifies a small subset of extremely constrained developmental enhancers.
    Nat Genet (6 January 2008)
    by Axel Visel, Shyam Prabhakar, Jennifer A A Akiyama, Malak Shoukry, Keith D D Lewis, Amy Holt, Ingrid Plajzer-Frick, Veena Afzal, Edward M M Rubin, Len A A Pennacchio
    posted to must-read by isimpson on 2008-08-28 16:21:56 as ** along with 5 people Stew maximilianh gjuggler emptyhb bpcusack
  • Learning Transcriptional Regulatory Networks from High Throughput Gene Expression Data Using Continuous Three-Way Mutual Information
    BMC Bioinformatics, Vol. 9 (03 November 2008), 467.
    by Weijun Luo, Kurt D Hankenson, Peter J Woolf
    posted to regulatory network must-read expression essential by isimpson on 2008-11-04 10:00:04 as ***** along with 4 people pengchy lptolik druvus sjung
  • Seeder: Discriminative Seeding DNA Motif Discovery.
    Bioinformatics (Oxford, England) (21 August 2008)
    by François Fauteux, Mathieu Blanchette, Martina V V Strömvik
    posted to must-read by isimpson on 2008-08-28 16:25:34 as ***** along with 4 people nuin brant maximilianh idonaldson
  • Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Raffaele Giancarlo, Davide Scaturro, Filippo Utro
    posted to must-read ensemble-clustering by isimpson on 2008-10-29 15:44:32 as ***** along with 5 people imina kittipat lptolik nuin druvus
  • Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo.
    BMC Bioinformatics, Vol. 3 (24 October 2002)
    by N Rajewsky, M Vergassola, U Gaul, ED Siggia
    posted to transcription-regulation must-read motifs motif-discovery database by isimpson on 2008-10-09 10:51:16 as ***** along with 6 people and 1 group ansobol indigoviolet adepace koller Stew csdhwang EisenLab
  • Human-Specific Gain of Function in a Developmental Enhancer
    Science, Vol. 321, No. 5894. (5 September 2008), pp. 1346-1350.
    by Shyam Prabhakar, Axel Visel, Jennifer A Akiyama, Malak Shoukry, Keith D Lewis, Amy Holt, Ingrid Plajzer-Frick, Harris Morrison, David R Fitzpatrick, Veena Afzal, Len A Pennacchio, Edward M Rubin, James P Noonan
    posted to transcription-regulation regulatory must-read by isimpson on 2008-09-05 13:24:03 as ***** along with 12 people and 1 group jfr Stew shoshin bpcusack emptyhb Zephyrus sebastien_vigneau djkt natstreet maximilianh caseybrown eskay Roswell Cancer Crosstalk
  • Systematic identification of mammalian regulatory motifs' target genes and functions
    Nature Methods, Vol. 5, No. 4. (02 March 2008), pp. 347-353.
    by Jason B Warner, Anthony A Philippakis, Savina A Jaeger, Fangxue S He, Jolinta Lin, Martha L Bulyk
    posted to must-read by isimpson on 2008-07-03 13:35:29 as ***** along with 6 people and 1 group carlfulp Stew tmmurali zwang ptrobajo guhjy Bioinformatics - CRUK
  • Predicting expression patterns from regulatory sequence in Drosophila segmentation
    Nature (02 January 2008)
    by Eran Segal, Tali Raveh-Sadka, Mark Schroeder, Ulrich Unnerstall, Ulrike Gaul
    posted to transcription-regulation tfbs prediction must-read by isimpson on 2008-09-16 15:24:31 as read along with 16 people dlmace ptrobajo dakelley tmmurali eckart_bindewald djkt bootsy biomcgary idonaldson roys emptyhb pkharchenko meiklej jrest tresch siebert
  • Functional organization of the transcriptome in human brain
    Nature Neuroscience, Vol. 11, No. 11. (12 October 2008), pp. 1271-1282.
    by Michael C Oldham, Genevieve Konopka, Kazuya Iwamoto, Peter Langfelder, Tadafumi Kato, Steve Horvath, Daniel H Geschwind
    posted to must-read by isimpson on 2008-10-29 15:37:18 as ***** along with 5 people druvus balicea dubhelix cormierb psique
  • Eigengene networks for studying the relationships between co-expression modules
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Peter Langfelder, Steve Horvath
    posted to must-read by isimpson on 2008-10-29 15:37:36 as ***** along with 5 people aviad_work ptrobajo druvus jfr AlexanderPico
  • GENETICS: Enhancing Gene Regulation
    Science, Vol. 321, No. 5894. (5 September 2008), pp. 1300-1301.
    by Gregory A Wray, Courtney C Babbitt
    posted to transcription-regulation must-read by isimpson on 2008-09-05 13:24:41 as ***** along with 7 people and 1 group jfr huiminC oelemento sebastien_vigneau bpcusack Ema gracio BenosLab
  • Transcriptional control in embryonic Drosophila midline guidance assessed through a whole genome approach
    BMC Neuroscience, Vol. 8 (31 July 2007), 59.
    by Tiago R Magalhaes, Jessica Palmer, Pavel Tomancak, Katherine S Pollard
    posted to must-read by isimpson on 2008-11-20 00:05:34 as ***** along with 1 person and 1 group ajarman Jarman Lab
  • Systematic functional characterization of cis-regulatory motifs in human core promoters
    Genome Res. (6 February 2008), gr.6828808.
    by Saurabh Sinha, Adam S Adler, Yair Field, Howard Y Chang, Eran Segal
    posted to must-read by isimpson on 2008-07-03 13:37:04 as ***** along with 7 people heliopais ealloza lp2 cabbagezs idonaldson emptyhb gracio
  • Shadow Enhancers as a Source of Evolutionary Novelty
    Science, Vol. 321, No. 5894. (5 September 2008), 1314.
    by Joung-Woo Hong, David A Hendrix, Michael S Levine
    posted to transcription-regulation regulatory regulator must-read by isimpson on 2008-09-05 13:22:43 as ***** along with 14 people and 2 groups jfr rouault emptyhb dlobo sebastien_vigneau Stew bpcusack Ema carlfulp Zephyrus djkt natstreet maximilianh caseybrown GEB Roswell Cancer Crosstalk
  • Klumpfuss is involved in the determination of sensory organ precursors in Drosophila
    Developmental Biology (09 September 2008)
    by M Kaspar, M Schneider, W Chia, T Klein
    posted to regulation proneural must-read by isimpson on 2008-11-04 10:12:39 as *****
  • DNA binding sites: representation and discovery.
    Bioinformatics, Vol. 16, No. 1. (January 2000), pp. 16-23.
    by GD Stormo
    posted to transcription-regulation review must-read motifs motif-discovery by isimpson on 2008-09-01 16:41:35 as ***** along with 9 people and 1 group yylin Stew emptyhb kaarsinogen mbj dquest lusk ezralanglois xili03 Bioinformatics - CRUK
  • CisModule: de novo discovery of cis-regulatory modules by hierarchical mixture modeling.
    Proc Natl Acad Sci U S A, Vol. 101, No. 33. (17 August 2004), pp. 12114-12119.
    by Q Zhou, WH Wong
    posted to transcription-regulation must-read motifs motif-discovery database by isimpson on 2008-10-09 10:52:02 as ***** along with 3 people and 1 group indigoviolet dpollard ep161302 EisenLab
  • Computational identification of transcriptional regulatory elements in DNA sequence
    Nucl. Acids Res., Vol. 34, No. 12. (19 July 2006), pp. 3585-3598.
    by Debraj Guhathakurta
    posted to transcription-regulation review must-read motifs motif-discovery gene by isimpson on 2008-09-01 16:35:53 as ***** along with 10 people and 1 group aprasad tmmurali jfr johncumbers reidy giovanni cabbagezs ankur_iitg vietanh0 xili03 GeschwindLab
  • Computation-based discovery of related transcriptional regulatory modules and motifs using an experimentally validated combinatorial model.
    Genome Res, Vol. 12, No. 7. (July 2002), pp. 1019-1028.
    by MS Halfon, Y Grad, GM Church, AM Michelson
    posted to transcription-regulation must-read motifs motif-discovery database by isimpson on 2008-10-09 10:50:50 as ***** along with 1 person maximilianh
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