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Tag pathway [569 articles]

Recent papers classified by the tag pathway.
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  • From Pathways Databases to Network Models of Switching Behavior
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e152.
    by Baltazar D Aguda, Andrew B Goryachev
    posted to database modeling network pathway by zwang on 2007-11-02 08:00:02 as ** along with 4 people giovenko bayesian julius Ema
  • A Genomewide Functional Network for the Laboratory Mouse
    PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000165.
    by Yuanfang Guan, Chad L Myers, Rong Lu, Ihor R Lemischka, Carol J Bult, Olga G Troyanskaya
    posted to pathway network by zwang on 2008-10-20 01:55:47 as ** along with 7 people biomcgary cswinburne pengchy ptrobajo guhjy grahamc tmmurali
  • A comprehensive modular map of molecular interactions in RB/E2F pathway
    Mol Syst Biol, Vol. 4 (4 March 2008)
    by Laurence Calzone, Amelie Gelay, Andrei Zinovyev, Francois Radvanyl, Emmanuel Barillot
    posted to interaction pathway by zwang on 2008-03-06 04:31:27 as ** along with 2 people jfr thomaskelder
  • Dynamics and Design Principles of a Basic Regulatory Architecture Controlling Metabolic Pathways
    PLoS Biology, Vol. 6, No. 6. (1 June 2008), e146.
    by Chen-Shan Chin, Victor Chubukov, Emmitt R Jolly, Joe Derisi, Hao Li
    posted to metabolism pathway regulatory by zwang on 2008-06-27 04:07:53 as ** along with 4 people djkt marck michaelbarton jjray
  • The liver pharmacological and xenobiotic gene response repertoire
    Mol Syst Biol, Vol. 4 (25 March 2008)
    by Georges Natsoulis, Cecelia I Pearson, Jeremy Gollub, Eynon, Joe Ferng, Ramesh Nair, Radha Idury, May D Lee, Mark R Fielden, Richard J Brennan, Alan H Roter, Kurt Jarnagin
    posted to clustering gene human metabolism pathway by zwang on 2008-03-27 05:07:04 as ** along with 5 people and 1 group guhjy caseybrown aubinhon ptrobajo shikin Integrative_biology_behavior
  • A systems biology approach for pathway level analysis
    Genome Res. (4 September 2007), gr.6202607.
    by Sorin Draghici, Purvesh Khatri, Adi L Tarca, Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero
    posted to network pathway system by zwang on 2007-09-05 04:04:19 as * along with 17 people and 3 groups ptrobajo pengchy tmmurali dragonrez jfr gurkanbebek grahamc shigepong cabbagezs cerami xingxu shikin idonaldson Pao-Yang thomaskelder heliopais AlexanderPico Bioinformatics ParkinsonLab_at_MaRS OPIG
  • RNA-mediated epigenetic programming of a genome-rearrangement pathway
    Nature (28 November 2007)
    by Mariusz Nowacki, Vikram Vijayan, Yi Zhou, Klaas Schotanus, Thomas G Doak, Laura F Landweber
    posted to epigenetics genome pathway rna by zwang on 2008-01-10 01:42:38 as ** along with 6 people balicea mtagaya sebastien_vigneau margaritis rebeccamancy rschulz
  • Regulatory Pathway Analysis by High-Throughput In Situ Hybridization
    PLoS Genetics, Vol. 3, No. 10. (1 October 2007), e178.
    by Axel Visel, James Carson, Judit Oldekamp, Marei Warnecke, Vladimira Jakubcakova, Xunlei Zhou, Chad A Shaw, Gonzalo Alvarez-Bolado, Gregor Eichele
    posted to clustering experiment pathway regulatory by zwang on 2007-10-22 07:22:15 as **
  • Structure-based design of a pathway-specific nuclear import inhibitor
    Nature Structural & Molecular Biology, Vol. 14, No. 5. (15 April 2007), pp. 452-454.
    by Ahmet E Cansizoglu, Brittany J Lee, Zi C Zhang, Beatriz MA Fontoura, Yuh M Chook
    posted to design nuclear pathway structure by zwang on 2007-05-08 11:53:58 as **
  • Evaluation of biological pathways involved in chemotherapy response in breast cancer
    Breast Cancer Research, Vol. 10 (29 April 2008), R37.
    by Attila Tordai, Jing Wang, Fabrice Andre, Cornelia Liedtke, Kai Yan, Christos Sotiriou, Gabriel N Hortobagyi, Fraser W Symmans, Lajos Pusztai
    posted to pathway biology subtypes response chemotherapy cancer-crosstalk cancer breast by Zephyrus on 2008-09-09 13:22:05 as **** along with 1 person and 2 groups jfr Breast Cancer Reading Club Breast cancer
  • Energy cost of infection burden: An approach to understanding the dynamics of host–pathogen interactions
    Journal of Theoretical Biology, Vol. 241, No. 1. (07 July 2006), pp. 1-13.
    by A Romanyukha, S Rudnev, I Sidorov
    posted to statistics read pathway model infection immunology immune evolution energy balance by Zephyrus on 2008-11-09 18:50:29 as ** along with 1 group R.E.A.D
  • Which evolutionary processes influence natural genetic variation for phenotypic traits?
    Nat Rev Genet, Vol. 8, No. 11. (November 2007), pp. 845-856.
    by Thomas Mitchell-Olds, John H Willis, David B Goldstein
    posted to variation read population phenotype pathway genetics evolution disease by Zephyrus on 2008-11-09 18:36:41 as ** along with 3 people and 2 groups cwbrown zwang ryanraaum R.E.A.D EisenLab
  • Effect of oestradiol on mouse uterine epithelial cell tumour necrosis factor-alpha release is mediated through uterine stromal cells
    Immunology, Vol. 115, No. 1. (May 2005), pp. 99-107.
    by Katherine S Grant-Tschudy, Charles R Wira
    posted to wira uterine tnfa thesis stroma reproductive pathway mice mechanism estrogen epithelium by Zephyrus on 2008-10-27 07:08:22 as **
  • Racial disparities in breast cancer outcome
    Cancer, Vol. 110, No. 9. (2007), pp. 1880-1888.
    by Romano Demicheli, Michael W Retsky, William JM Hrushesky, Michael Baum, Isaac D Gukas, Ismail Jatoi
    posted to disparities pathway review outcome mechanism caucasian cancer breast african-american by Zephyrus on 2008-11-19 13:47:25 as ** along with 1 group Breast Cancer Reading Club
  • The combination of high cyclin E and Skp2 expression in breast cancer is associated with a poor prognosis and the basal phenotype
    Human Pathology, Vol. 39, No. 10. (October 2008), pp. 1431-1437.
    by David Voduc, Torsten O Nielsen, Maggie C Cheang, William D Foulkes
    posted to pathway skp2 phenotype journal-club cyclin-e cancer breast basal by Zephyrus on 2008-09-16 16:36:13 as ** along with 1 group Breast Cancer Reading Club
  • Vitamin D receptor regulation of the steroid/bile acid sulfotransferase SULT2A1.
    Methods in enzymology, Vol. 400 (2005), pp. 165-191.
    by B Chatterjee, I Echchgadda, CS Song
    posted to xenoestrogen vitd pathway metabolism mechanism common-mechanisms by Zephyrus on 2008-11-30 17:09:07 as **
  • Effects of estrogen receptor subtype-selective agonists on immune functions in ovariectomized mice
    International Immunopharmacology, Vol. 6, No. 9. (September 2006), pp. 1413-1423.
    by J Li, R Mcmurray
    posted to thesis subtypes receptor pathway mechanism immunomodulation estrogen confounder by Zephyrus on 2008-11-18 19:08:35 as **
  • Age-specific differences in oncogenic pathway deregulation seen in human breast tumors.
    PLoS ONE, Vol. 3, No. 1. (2008)
    by CK Anders, CR Acharya, DS Hsu, G Broadwater, K Garman, JA Foekens, Y Zhang, Y Wang, K Marcom, JR Marks, S Mukherjee, JR Nevins, KL Blackwell, A Potti
    posted to pathway oncogene deregulation comparisons cancer breast age by Zephyrus on 2008-10-05 20:54:48 as ** along with 3 people and 1 group balicea misonneh jfr Roswell Cancer Crosstalk
  • Stem cell trafficking in tissue development, growth, and disease.
    Cell, Vol. 132, No. 4. (22 February 2008), pp. 612-630.
    by DJ Laird, UH von Andrian, AJ Wagers
    posted to traffic stem-cell pathway by Zephyrus on 2008-10-20 21:35:05 as ** along with 1 person ajaymalik
  • Overweight/obesity and cancer genesis: More than a biological link
    Biomedicine & Pharmacotherapy, Vol. 61, No. 10. (December 2007), pp. 665-678.
    by P Irigaray, J Newby, S Lacomme, D Belpomme
    posted to xenobiotics read pathway obesity environment biology by Zephyrus on 2008-11-24 23:05:27 as **
  • Epithelial-mesenchymal transition (EMT) is not sufficient for spontaneous murine breast cancer metastasis.
    Developmental dynamics : an official publication of the American Association of Anatomists, Vol. 237, No. 10. (October 2008), pp. 2755-2768.
    by Y Lou, O Preobrazhenska, U Auf dem Keller, M Sutcliffe, L Barclay, PC McDonald, C Roskelley, CM Overall, S Dedhar
    posted to rat pathway metastasis emt cancer breast by Zephyrus on 2008-10-13 02:52:19 as ** along with 1 group Breast Cancer Reading Club
  • Molecular epidemiology, cancer-related symptoms, and cytokines pathway.
    The lancet oncology, Vol. 9, No. 8. (August 2008), pp. 777-785.
    by CC Reyes-Gibby, X Wu, M Spitz, R Kurzrock, M Fisch, E Bruera, S Shete
    posted to cytokine pathway thesis polymorphisms epidemiology confounder cancer by Zephyrus on 2008-09-15 18:18:20 as ** along with 1 person and 2 groups guhjy Roswell Cancer Crosstalk References
  • The developmental origins of health and disease: current theories and epigenetic mechanisms.
    Society of Reproduction and Fertility supplement, Vol. 64 (2007), pp. 425-443.
    by KD Sinclair, RG Lea, WD Rees, LE Young
    posted to prenatal read pathway natal mechanism epigenetics disease development by Zephyrus on 2008-11-13 02:13:30 as ** along with 1 group R.E.A.D
  • PathCase: Pathways Database System
    Bioinformatics (26 August 2008), btn459.
    by B Elliott, M Kirac, A Cakmak, G Yavas, S Mayes, E Cheng, Y Wang, C Gupta, G Ozsoyoglu, ZM Ozsoyoglu
    posted to pathway pathcase metabolic cancer-crosstalk cancer by Zephyrus on 2008-10-27 05:32:17 as ** along with 10 people and 2 groups AlexanderPico jfr ptrobajo druvus mdstobbe dullhunk guhjy aconesa renatomilani thomaskelder ConklinLab Roswell Cancer Crosstalk
  • Negative regulation of cytokine signaling.
    Clinical reviews in allergy & immunology, Vol. 28, No. 3. (June 2005), pp. 205-220.
    by A Yoshimura
    posted to stat socs signalling review pathway jak cytokine by Zephyrus on 2008-12-27 14:51:06 as ** along with 1 person guhjy
  • Cytokine loops driving senescence
    Nature Cell Biology, Vol. 10, No. 8., pp. 887-889.
    by Jiri Bartek, Zdenek Hodny, Jiri Lukas
    posted to cytokine pathway thesis senescence confounder cancer by Zephyrus on 2008-09-16 00:26:13 as ** along with 1 person guhjy
  • Basic research for hormone-sensitivity of breast cancer.
    Breast Cancer, Vol. 13, No. 2. (2006), pp. 123-128.
    by S Hayashi, Y Yamaguchi
    posted to thesis resources pathway mechanism hormone cancer breast basic-science background by Zephyrus on 2008-12-07 15:34:19 as ** along with 1 person and 1 group jfr Breast Cancer Reading Club
  • SOCS regulation of the JAK/STAT signalling pathway.
    Seminars in cell & developmental biology, Vol. 19, No. 4. (August 2008), pp. 414-422.
    by BA Croker, H Kiu, SE Nicholson
    posted to stat socs signalling review pathway jak cytokine by Zephyrus on 2008-12-27 14:50:12 as ** along with 1 person guhjy
  • Meta-analysis of human cancer microarrays reveals GATA3 is integral to the estrogen receptor alpha pathway
    Molecular Cancer, Vol. 7 (04 June 2008), 49.
    by Brian J Wilson, Vincent Giguere
    posted to pathway thesis receptor microarray immunology gata3 estrogen cancer breast by Zephyrus on 2008-10-05 21:00:09 as ** along with 1 person jfr
  • Estrone sulfate (E1S), a prognosis marker for tumor aggressiveness in prostate cancer (PCa)☆
    The Journal of Steroid Biochemistry and Molecular Biology, Vol. 109, No. 1-2. (March 2008), pp. 158-167.
    by F Giton, A Delataille, Y Allory, H Galons, F Vacherot, P Soyeux, C Abbou, S Loric, O Cussenot, J Raynaud
    posted to pathway shift prostate prognosis estrogen cancer by Zephyrus on 2008-10-31 05:48:20 as **
  • beta-estradiol suppresses T cell-mediated delayed-type hypersensitivity through suppression of antigen-presenting cell function and Th1 induction.
    International archives of allergy and immunology, Vol. 121, No. 2. (February 2000), pp. 161-169.
    by ML Salem, G Matsuzaki, K Kishihara, GA Madkour, K Nomoto
    posted to thesis th2 th1 pathway estrogen dth apc by Zephyrus on 2008-10-16 18:36:25 as *****
  • Carcinogenic metal compounds: recent insight into molecular and cellular mechanisms.
    Archives of toxicology, Vol. 82, No. 8. (August 2008), pp. 493-512.
    by D Beyersmann, A Hartwig
    posted to pathway review metals exposure cancer by Zephyrus on 2008-09-15 18:27:29 as ** along with 1 person guhjy
  • Estrogen Receptor-Positive and Estrogen Receptor-Negative Human Breast Cancer Cells: Regulation of Expression of Cancer-Related Genes by Estradiol and Tamoxifen
    Current Signal Transduction Therapy, Vol. 3, No. 1. (January 2008), pp. 7-21.
    by Murthy, Ven, Yuan, Xia, Liu, Guojin
    posted to thesis receptor pathway non-traditional mitochondria estrogen antioxidant by Zephyrus on 2008-12-01 00:02:09 as **
  • Hyaluronan in human tumors: pathobiological and prognostic messages from cell-associated and stromal hyaluronan.
    Seminars in cancer biology, Vol. 18, No. 4. (August 2008), pp. 288-295.
    by RH Tammi, A Kultti, VM Kosma, R Pirinen, P Auvinen, MI Tammi
    posted to pathway tumour stroma microenvironment hyaluronan cancer by Zephyrus on 2008-09-15 18:31:16 as ** along with 1 person guhjy
  • Reactive oxygen species and angiogenesis: NADPH oxidase as target for cancer therapy.
    Cancer letters, Vol. 266, No. 1. (18 July 2008), pp. 37-52.
    by M Ushio-Fukai, Y Nakamura
    posted to pathway web-study stress ros cancer antioxidants angiogenesis by Zephyrus on 2008-09-15 18:29:58 as ** along with 1 person guhjy
  • Ecological and evolutionary forces shaping microbial diversity in the human intestine.
    Cell, Vol. 124, No. 4. (24 February 2006), pp. 837-848.
    by RE Ley, DA Peterson, JI Gordon
    posted to pathway microbiota microbiome ley gut evolution diversity by Zephyrus on 2008-10-14 18:01:45 as ** along with 3 people and 1 group nickluscombe wenhan crazypumpkin EBI-regulation
  • Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences
    Cell, Vol. 135, No. 2. (17 October 2008), pp. 216-226.
    by A Raj, A Vanoudenaarden
    posted to pathway stochastic gene-expression cell cancer-crosstalk cancer by Zephyrus on 2008-11-06 21:12:33 as ** along with 7 people and 1 group jbhiatt GustavoLacerda samgj erel10 ocs sg45653 jjray Roswell Cancer Crosstalk
  • Genetic association analysis of copy-number variation (CNV) in human disease pathogenesis.
    Genomics (23 September 2008)
    by Iuliana Ionita-Laza, Angela J J Rogers, Christoph Lange, Benjamin A A Raby, Charles Lee
    posted to pathway pathogenesis genomics cnv cancer-crosstalk by Zephyrus on 2008-10-06 02:47:31 as ** along with 1 group Roswell Cancer Crosstalk
  • Unregulated inflammation shortens human functional longevity.
    Inflammation research : official journal of the European Histamine Research Society ... [et al.], Vol. 49, No. 11. (November 2000), pp. 561-570.
    by SA Brod
    posted to pathway mechanism lifespan inflammation by Zephyrus on 2008-11-17 15:36:12 as ** along with 1 person and 1 group annathomson References
  • notes Pathway analysis reveals functional convergence of gene expression profiles in breast cancer.
    BMC medical genomics, Vol. 1 (2008)
    by R Shen, AM Chinnaiyan, D Ghosh
    posted to signature proteins profiles pathway gene-expression convergence cancer breast analysis by Zephyrus on 2008-11-03 15:34:26 as ** along with 2 people and 3 groups songpku jfr Roswell Cancer Crosstalk BCDC Lab Notebook Breast Cancer Reading Club
  • Estrogen Induces Lung Metastasis through a Host Compartment-Specific Response
    Cancer Res, Vol. 66, No. 7. (1 April 2006), pp. 3667-3672.
    by Carole L Banka, Caren V Lund, Mai T Nguyen, Andrew J Pakchoian, Barbara M Mueller, Brian P Eliceiri
    posted to thesis pathway metastasis mechanism lung interesting immune estrogen background by Zephyrus on 2008-11-28 23:37:13 as **
  • Regulation of the immune response to cestode infection by progesterone is due to its metabolism to estradiol
    Microbes and Infection, Vol. 7, No. 3. (March 2005), pp. 485-493.
    by J Vargasvillavicencio, C Larralde, M Deleonnava, J Moralesmontor
    posted to thesis th2 th1 progesterone pathway pathogenesis parasitic metabolism infection estrogen by Zephyrus on 2008-10-17 02:48:53 as **
  • Recurrence dynamics does not depend on the recurrence site
    Breast Cancer Research, Vol. 10, No. 5. (2008)
    by Romano Demicheli, Elia Biganzoli, Patrizia Boracchi, Marco Greco, Michael Retsky
    posted to statistics pathway model metastasis lung cancer breast by Zephyrus on 2008-10-13 02:49:02 as ** along with 1 person and 2 groups songpku Roswell Cancer Crosstalk Breast Cancer Reading Club
  • notes Infection, vaccines and other environmental triggers of autoimmunity
    Autoimmunity, Vol. 38, No. 3. (2005), pp. 235-245.
    by Vered Molina, Yehuda Shoenfeld
    posted to vaccine review pathway mechanism infection autoimmune by Zephyrus on 2008-11-20 23:58:19 as **
  • Pathway analysis of gene signatures predicting metastasis of node-negative primary breast cancer
    BMC Cancer, Vol. 7 (25 September 2007), 182.
    by Jack X Yu, Anieta M Sieuwerts, Yi Zhang, John WM Martens, Marcel Smid, Jan GM Klijn, Yixin Wang, John A Foekens
    posted to signature pathway node negative metastasis gene-expression cancer breast by Zephyrus on 2008-10-05 20:34:58 as ** along with 2 people and 1 group jfr ealloza BioinfoCIPF
  • The suppressors of cytokine signalling E3 ligases behave as tumour suppressors.
    Biochemical Society transactions, Vol. 36, No. Pt 3. (June 2008), pp. 464-468.
    by J Elliott, MB Hookham, JA Johnston
    posted to tumour suppressor stat signalling review pathway ligase jak e3 cytokine by Zephyrus on 2008-12-27 14:52:52 as ** along with 1 person guhjy
  • Mechanisms of Disease: prediction and prevention of breast cancer--cellular and molecular interactions.
    Nature clinical practice. Oncology, Vol. 2, No. 12. (December 2005), pp. 635-646.
    by A Howell, AH Sims, KR Ong, MN Harvie, DG Evans, RB Clarke
    posted to reference prevention pathway mechanism cancer breast by Zephyrus on 2008-11-28 14:19:09 as ** along with 1 person and 2 groups jfr References Breast Cancer Reading Club
  • An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer.
    BMC genomics, Vol. 9 Suppl 1 (2008)
    by M Xu, MC Kao, J Nunez-Iglesias, JR Nevins, M West, XJ Zhou
    posted to pathway molecular cancer breast by Zephyrus on 2008-10-05 20:33:25 as ** along with 3 people guhjy cswinburne jfr
  • Cancer metastasis: building a framework.
    Cell, Vol. 127, No. 4. (17 November 2006), pp. 679-695.
    by GP Gupta, J Massagué
    posted to thesis pathway metastasis framework cancer background by Zephyrus on 2008-10-20 21:18:37 as ** along with 2 people myzhang jfr
  • Mechanisms of malignant progression
    Carcinogenesis, Vol. 29, No. 6. (1 June 2008), pp. 1092-1095.
    by Robert A Weinberg
    posted to thesis progression pathway mechanism cancer-crosstalk cancer background by Zephyrus on 2008-11-29 10:00:51 as ** along with 1 group Roswell Cancer Crosstalk
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