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Tag regulatory [282 articles]

Recent papers classified by the tag regulatory.
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  • Pairing of competitive and topologically distinct regulatory modules enhances patterned gene expression
    Mol Syst Biol, Vol. 4 (12 February 2008)
    by Itai Yanai, Ryan L Baugh, Jessica J Smith, Casey Roehrig, Shai S Shen-Orr, Julia M Claggett, Andrew A Hill, Donna K Slonim, Craig P Hunter
    posted to geneexpression module regulatory by zwang on 2008-02-17 10:41:25 as ** along with 1 person roys
  • Regulatory Pathway Analysis by High-Throughput In Situ Hybridization
    PLoS Genetics, Vol. 3, No. 10. (1 October 2007), e178.
    by Axel Visel, James Carson, Judit Oldekamp, Marei Warnecke, Vladimira Jakubcakova, Xunlei Zhou, Chad A Shaw, Gonzalo Alvarez-Bolado, Gregor Eichele
    posted to clustering experiment pathway regulatory by zwang on 2007-10-22 07:22:15 as **
  • Systematic Identification of cis-Regulatory Sequences Active in Mouse and Human Embryonic Stem Cells
    PLoS Genetics, Vol. 3, No. 8. (1 August 2007), e145.
    by Marica Grskovic, Christina Chaivorapol, Alexandre Gaspar-Maia, Hao Li, Miguel Ramalho-Santos
    posted to human motif prediction regulatory sequence systematic by zwang on 2007-09-03 04:40:58 as **
  • Identification and Characterization of Cell Type-Specific and Ubiquitous Chromatin Regulatory Structures in the Human Genome.
    PLoS Genet, Vol. 3, No. 8. (17 August 2007)
    by Hualin Xi, Hennady P P Shulha, Jane M M Lin, Teresa R R Vales, Yutao Fu, David M M Bodine, Ronald D G D McKay, Josh G G Chenoweth, Paul J J Tesar, Terrence S S Furey, Bing Ren, Zhiping Weng, Gregory E E Crawford
    posted to chromatin genome human regulatory structure by zwang on 2007-09-03 15:16:23 as * along with 6 people and 2 groups caseybrown dchughes sebastien_vigneau cabbagezs maximilianh eviledv G4ID Genetics-of-Gambling
  • Dynamics and Design Principles of a Basic Regulatory Architecture Controlling Metabolic Pathways
    PLoS Biology, Vol. 6, No. 6. (1 June 2008), e146.
    by Chen-Shan Chin, Victor Chubukov, Emmitt R Jolly, Joe Derisi, Hao Li
    posted to metabolism pathway regulatory by zwang on 2008-06-27 04:07:53 as ** along with 4 people djkt marck michaelbarton jjray
  • Systematic identification of mammalian regulatory motifs' target genes and functions
    Nature Methods, Vol. 5, No. 4. (02 March 2008), pp. 347-353.
    by Jason B Warner, Anthony A Philippakis, Savina A Jaeger, Fangxue S He, Jolinta Lin, Martha L Bulyk
    posted to motif regulatory by zwang on 2008-04-02 07:26:28 as ** along with 6 people and 1 group carlfulp Stew tmmurali ptrobajo guhjy isimpson Bioinformatics - CRUK
  • Trawler: de novo regulatory motif discovery pipeline for chromatin immunoprecipitation
    Nature Methods, Vol. 4, No. 7. (24 June 2007), pp. 563-565.
    by Laurence Ettwiller, Benedict Paten, Mirana Ramialison, Ewan Birney, Joachim Wittbrodt
    posted to chromatin motif prediction regulatory by zwang on 2007-08-28 03:56:29 as * along with 3 people and 1 group brant maximilianh fpattyn EisenLab
  • Bayesian Orthogonal Least Squares (BOLS) algorithm for reverse engineering of gene regulatory networks
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Chang S Kim
    posted to algorithm bayesian gene network regulatory reverse-engineering by zwang on 2007-07-13 17:20:00 as *** along with 4 people guhjy rdiaz frohike shigepong
  • A modular and extensible RNA-based gene-regulatory platform for engineering cellular function
    PNAS (20 August 2007), 0703961104.
    by Maung N Win, Christina D Smolke
    posted to gene regulatory rna by zwang on 2007-08-25 03:58:38 as * along with 5 people and 2 groups msuarezdiez dchughes kengg Jporci austin G4ID Genetics-of-Gambling
  • The temporal response of the Mycobacterium tuberculosis gene regulatory network during growth arrest
    Mol Syst Biol, Vol. 4 (4 November 2008)
    by Gabor Balazsi, Allison P Heath, Lanbo Shi, Maria L Gennaro
    posted to regulatory network gene by zwang on 2008-11-05 02:51:18 as **
  • Morphological evolution through multiple cis-regulatory mutations at a single gene
    Nature (15 July 2007)
    by Alistair P Mcgregor, Virginie Orgogozo, Isabelle Delon, Jennifer Zanet, Dayalan G Srinivasan, François Payre, David L Stern
    posted to evolution morphological mutation regulatory by zwang on 2007-08-09 15:32:07 as ** along with 7 people and 2 groups carlfulp dpollard djkt Stew xingxu cisevol emptyhb EisenLab cis-regulatory-evolution
  • Evolutionary plasticity of developmental gene regulatory network architecture
    Proceedings of the National Academy of Sciences (27 November 2007), 0709994104.
    by Veronica F Hinman, Eric H Davidson
    posted to architecture evolution gene network regulatory by zwang on 2007-12-05 10:58:17 as ** along with 3 people tmmurali maximilianh roys
  • Innovation and robustness in complex regulatory gene networks.
    Proc Natl Acad Sci U S A (9 August 2007)
    by S Ciliberti, O C C Martin, A Wagner
    posted to gene network regulatory by zwang on 2007-08-27 08:56:14 as ** along with 8 people and 3 groups balicea dakelley cmzmasek dlobo jmenche dpollard sebastien_vigneau cisevol GEB EisenLab cis-regulatory-evolution
  • Functional evolution of the p53 regulatory network through its target response elements
    Proceedings of the National Academy of Sciences (10 January 2008), 0704694105.
    by Anil G Jegga, Alberto Inga, Daniel Menendez, Bruce J Aronow, Michael A Resnick
    posted to evolution network regulatory by zwang on 2008-01-17 04:26:16 as ** along with 6 people and 1 group brant cjeans cisevol idonaldson renatomilani guhjy cis-regulatory-evolution
  • A Computational Pipeline for High- Throughput Discovery of cis-Regulatory Noncoding RNA in Prokaryotes
    PLoS Computational Biology, Vol. 3, No. 7. (1 July 2007), e126.
    by Zizhen Yao, Jeffrey Barrick, Zasha Weinberg, Shane Neph, Ronald Breaker, Martin Tompa, Walter L Ruzzo
    posted to bacterial insilico ncrna regulatory rna by zwang on 2007-08-29 02:30:33 as * along with 4 people sebastien_vigneau lp2 cabbagezs blobbybirdman
  • MORPH: Probabilistic Alignment Combined with Hidden Markov Models of cis-Regulatory Modules
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e216.
    by Saurabh Sinha, Xin He
    posted to alignment hmm modeling module regulatory by zwang on 2007-12-10 04:29:31 as *** along with 7 people and 2 groups ana dpollard cjeans maximilianh hpaces Ema uwe EisenLab cis-regulatory-evolution
  • A Gene Regulatory Network Subcircuit Drives a Dynamic Pattern of Gene Expression
    Science, Vol. 318, No. 5851. (2 November 2007), pp. 794-797.
    by Joel Smith, Christina Theodoris, Eric H Davidson
    posted to dynamics expression gene network regulatory by zwang on 2007-11-05 14:33:49 as * along with 5 people and 1 group cwbrown lshaw shigepong heliopais hpaces EisenLab
  • Global and Local Architecture of the Mammalian microRNA-Transcription Factor Regulatory Network.
    PLoS Comput Biol, Vol. 3, No. 7. (13 July 2007)
    by Reut Shalgi, Daniel Lieber, Moshe Oren, Yitzhak Pilpel
    posted to mammal microrna network regulatory transcription by zwang on 2007-08-29 02:29:18 as * along with 13 people and 2 groups mtagaya jfr andersbj rdiaz sebastien_vigneau ealloza bootsy cabbagezs rahulthadani heliopais ale maralena OriginalLurch Bioinformatics microRNA
  • Bioinformatics for the 'bench biologist': how to find regulatory regions in genomic DNA.
    Nat Immunol, Vol. 5, No. 8. (August 2004), pp. 768-774.
    by J Nardone, DU Lee, KM Ansel, A Rao
    posted to regulatory sites transcription by ziquje on 2005-05-16 16:47:24 as ***** along with 3 people moborg kianpeng Jporci
  • Transcriptional regulatory code of a eukaryotic genome
    Nature, Vol. 431, No. 7004. (2004), pp. 99-104.
    by Christopher T Harbison, Benjamin D Gordon, Tong I Lee, Nicola J Rinaldi, Kenzie D Macisaac, Timothy W Danford, Nancy M Hannett, Jean-Bosco Tagne, David B Reynolds, Jane Yoo, Ezra G Jennings, Julia Zeitlinger, Dmitry K Pokholok, Manolis Kellis, Alex P Rolfe, Ken T Takusagawa, Eric S Lander, David K Gifford, Ernest Fraenkel, Richard A Young
    posted to regulatory transcription by xili03 on 2008-01-10 02:23:55 as ** along with 24 people and 8 groups siebert alokm tuck lyongu kaspermunch dpollard balicea kt dchughes nirfriedman cmm nickluscombe kengg gespim koller lusk nklee cisevol njcitulike brant mariakmejia kristallreiner snow_dragon aalibes Bioinformatics EisenLab FAB-lab G4ID EBI-regulation Plantandetc Genetics-of-Gambling BergmanLab
  • Evolution of Transcription Factor Binding Sites in Mammalian Gene Regulatory Regions: Conservation and Turnover
    Mol Biol Evol, Vol. 19, No. 7. (1 July 2002), pp. 1114-1121.
    by Emmanouil T Dermitzakis, Andrew G Clark
    posted to regulatory site by xili03 on 2008-04-21 02:47:03 as read along with 3 people and 2 groups adepace cisevol emptyhb EisenLab cis-regulatory-evolution
  • Implementing changes to the state operations manual.
    Consult Pharm, Vol. 22, No. 2. (February 2007)
    by CM Martin, C Saxton-McSpadden
    posted to bm long_term_care nursing_facility nursing_home regulatory senior_care_research skilled_nursing_facility snf by worx11 on 2007-07-25 19:35:08 as ** along with 1 group XROWXR
  • Consultant pharmacists and the survey process.
    Consult Pharm, Vol. 21, No. 7. (July 2006), pp. 556-560.
    by CS McSpadden
    posted to bm pharmacist quality regulatory senior_care_research skilled_nursing_facility snf by worx11 on 2007-07-30 16:17:16 as *** along with 1 group XROWXR
  • The transcriptional regulatory code of eukaryotic cells - insights from genome-wide analysis of chromatin organization and transcription factor binding
    Current Opinion in Cell Biology, Vol. 18, No. 3. (June 2006), pp. 291-298.
    by Leah O Barrera, Bing Ren
    posted to regulatory by vietanh0 on 2007-11-27 15:10:48 as ** along with 4 people and 4 groups dchughes cmm oannes lusk FAB-lab G4ID Regulomics_UCHSC Genetics-of-Gambling
  • Validating module network learning algorithms using simulated data
    BMC Bioinformatics, Vol. 8, No. Suppl 2. (2007)
    by Tom Michoel, Steven Maere, Eric Bonnet, Anagha Joshi, Yvan Saeys, Tim Van den Bulcke, Koenraad Van Leemput, Piet van Remortel, Martin Kuiper, Kathleen Marchal, Yves Van de Peer
    posted to regulatory by vietanh0 on 2007-11-28 15:57:35 as ** along with 7 people and 2 groups irinamohorianu ptrobajo shigepong ajgentles erbon mattjb srp33 ComplexAdaptiveSystems DSTO-CAS
  • Computational identification of transcriptional regulatory elements in DNA sequence
    Nucl. Acids Res., Vol. 34, No. 12. (19 July 2006), pp. 3585-3598.
    by Debraj Guhathakurta
    posted to regulatory by vietanh0 on 2007-11-09 20:41:38 as ** along with 10 people and 1 group aprasad isimpson tmmurali jfr johncumbers reidy giovanni cabbagezs ankur_iitg xili03 GeschwindLab
  • Genome-wide transcription and the implications for genomic organization.
    Nat Rev Genet (8 May 2007)
    by Philipp Kapranov, Aarron T T Willingham, Thomas R R Gingeras
    posted to network regulatory sysbio by vietanh0 on 2007-11-10 12:25:12 as ** along with 17 people and 5 groups emptyhb pengchy guhjy balicea xico dchughes kengg sebastien_vigneau zwang ajgentles Ema asddd hanansh antonkratz maximilianh GeeSharpMinor inesdesantiago Bioinformatics WetBiology G4ID Plantandetc Genetics-of-Gambling
  • Community-based recruitment strategies for a longitudinal interventional study: the VECAT experience.
    J Clin Epidemiol, Vol. 53, No. 5. (May 2000), pp. 541-548.
    by SK Garrett, AP Thomas, F Cicuttini, C Silagy, HR Taylor, JJ McNeil
    posted to regulatory by Vaccine on 2005-11-08 16:09:42 as **
  • Why certain vaccines have been delayed or not developed at all.
    Health Aff (Millwood), Vol. 24, No. 3. (n 2005), pp. 631-634.
    by SA Plotkin
    posted to regulatory by Vaccine on 2005-12-15 17:08:31 as **
  • The role of economic evaluation in vaccine decision making: focus on meningococcal group C conjugate vaccine.
    Pharmacoeconomics, Vol. 23, No. 9. (2005), pp. 855-874.
    by R Welte, CL Trotter, WJ Edmunds, MJ Postma, P Beutels
    posted to regulatory by Vaccine on 2005-12-15 19:30:30 as **
  • Regulatory considerations for marker vaccines and diagnostic tests in the U.S.
    Biologicals (26 October 2005)
    by Patricia L L Foley, Richard E E Hill
    posted to regulatory by Vaccine on 2005-11-09 17:28:23 as read
  • Vaccine INDs: review of clinical holds.
    Vaccine, Vol. 23, No. 9. (19 January 2005), pp. 1099-1101.
    by DL Miller, JJ Ross
    posted to regulatory by Vaccine on 2005-11-09 16:45:45 as read
  • The role of "go no-go" decisions in TB vaccine development.
    Microbes Infect, Vol. 7, No. 5-6. (May 2005), pp. 899-904.
    by JC Sadoff, D Hone
    posted to regulatory by Vaccine on 2005-12-15 17:09:48 as **
  • FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin.
    Genome Res (19 December 2006)
    by Paul G G Giresi, Jonghwan Kim, Ryan M M McDaniell, Vishwanath R R Iyer, Jason D D Lieb
    posted to chromatin elements encode faire microarray regulatory by uz_labu_laimi on 2007-03-04 04:56:59 as read along with 2 people and 1 group dpollard olympos EisenLab
  • From Genes to Flower Patterns and Evolution: Dynamic Models of Gene Regulatory Networks
    Journal of Plant Growth Regulation, Vol. 25, No. 4. (December 2006), pp. 278-289.
    by Chaos, Alvaro, Aldana, Max, Espinosa-Soto, Carlos, Leon, Berenice, Arroyo, Adriana, Alvarez-Buylla, Elena
    posted to self-organization regulatory pattern networks models model gene formation flowers evolution dynamic discrete development boolean abc by tyvokka on 2008-09-30 14:56:39 as read
  • Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
    Bioinformatics, Vol. 15, No. 7. (1 July 1999), pp. 563-577.
    by Gz Hertz, Gd Stormo
    posted to regulatory transcription_factor by tuck on 2006-12-14 03:24:18 as ** along with 5 people and 1 group yylin indigoviolet dquest lusk chad_davis EisenLab
  • Non-coding RNA.
    Hum Mol Genet, Vol. 15, No. suppl_1. (15 April 2006)
    by John S S Mattick, Igor V V Makunin
    posted to regulatory rna by tuck on 2006-05-09 05:26:34 as ** along with 12 people and 7 groups myrtilus marcius eckart_bindewald tardigrade andersbj dchughes mtagaya scroft bsmagic cabbagezs bertelsen robertkofler Bioinformatics microRNA G4ID BioinfoCIPF bioinplant SGU-CIPF Genetics-of-Gambling
  • Gene regulatory network growth by duplication.
    Nat Genet, Vol. 36, No. 5. (May 2004), pp. 492-496.
    by SA Teichmann, MM Babu
    posted to regulatory network gene duplication by treangen on 2008-11-19 13:33:55 as *** along with 11 people and 2 groups kaarsinogen snuppepuppan korakot LeightonP hununu briann jtextori balicea tny yoh Ema Philosophy_of_Information Blog_and_Wiki_Research
  • The Importance of Bottlenecks in Protein Networks: Correlation with Gene Essentiality and Expression Dynamics
    PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e59.
    by Haiyuan Yu, Philip M Kim, Emmett Sprecher, Valery Trifonov, Mark Gerstein
    posted to bad betweenness-centrality methods network regulatory term yeast by Takayuki on 2008-06-09 07:12:05 as read along with 5 people jiny jfr zwang hryk carlk
  • Devising transcriptional regulatory networks operating during the cell cycle and differentiation using ChIP-on-chip
    Chromosome Research, Vol. 13, No. 3. (January 2005), pp. 275-288.
    by Alexandre Blais, Brian Dynlacht
    posted to chip-chip network regulatory transcriptional by tabu on 2006-01-17 14:23:03 as **
  • Core transcriptional regulatory circuitry in human embryonic stem cells.
    Cell, Vol. 122, No. 6. (23 September 2005), pp. 947-956.
    by LA Boyer, TI Lee, MF Cole, SE Johnstone, SS Levine, JP Zucker, MG Guenther, RM Kumar, HL Murray, RG Jenner, DK Gifford, DA Melton, R Jaenisch, RA Young
    posted to chip-chip networks regulatory transcriptional by tabu on 2006-01-18 09:43:52 as ** along with 13 people rklancer kentsis tardigrade balicea cconboy koller Stew faisalm mikaelhuss tdmckee brant dquest kengg
  • Constructing transcriptional regulatory networks
    Genes Dev., Vol. 19, No. 13. (1 July 2005), pp. 1499-1511.
    by Alexandre Blais, Brian D Dynlacht
    posted to network regulatory transcriptional by tabu on 2006-01-17 14:25:24 as ** along with 6 people and 2 groups brant balicea xico braingrind lusk jtomasch EisenLab WetBiology
  • Evolutionary changes in cis and trans gene regulation
    Nature, Vol. 430, No. 6995. (1 July 2004), pp. 85-88.
    by Patricia J Wittkopp, Belinda K Haerum, Andrew G Clark
    posted to network regulatory transcriptional by tabu on 2006-01-17 08:25:52 as ** along with 9 people and 2 groups balabu lyongu dpollard balicea adepace emmahe emarker mimulus_99 cisevol EisenLab cis-regulatory-evolution
  • Retroviral enhancer detection insertions in zebrafish combined with comparative genomics reveal genomic regulatory blocks - a fundamental feature of vertebrate genomes.
    Genome Biol, Vol. 8 Suppl 1 (2007)
    by H Kikuta, D Fredman, S Rinkwitz, B Lenhard, TS Becker
    posted to cis-regulatory comparative genomics regulatory zebrafish by Stew on 2007-12-07 16:30:39 as ** along with 1 person maximilianh
  • Combining Statistical Alignment and Phylogenetic Footprinting to Detect Regulatory Elements.
    Bioinformatics (18 March 2008)
    by R Satija, L Pachter, J Hein
    posted to alignment cis-regulatory drosophila footprinting phylogenetic prediction regulatory by Stew on 2008-06-06 08:24:29 as **** along with 5 people druvus eckart_bindewald maximilianh gjuggler Ema
  • Evolution of Evolvability in Gene Regulatory Networks
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000112.
    by Anton Crombach, Paulien Hogeweg
    posted to evolution evolvability gene networks regulatory by Stew on 2008-07-15 12:12:20 as *** along with 13 people and 1 group kaarsinogen renatomilani aramesh2 erel10 Ema jdiezperezj bootsy dlobo djkt dquest shoshin rebeccamancy Borelli GEB
  • Stubb: a program for discovery and analysis of cis-regulatory modules.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by S Sinha, Y Liang, E Siggia
    posted to cis prediction regulatory by Stew on 2007-07-27 22:17:11 as *** along with 2 people and 1 group indigoviolet csdhwang EisenLab
  • notes Modeling and simulation of genetic regulatory systems: a literature review.
    J Comput Biol, Vol. 9, No. 1. (2002), pp. 67-103.
    by H de Jong
    posted to biology computional genetic modelling networks regulatory simulation by sstoma on 2007-06-18 09:46:56 as read along with 19 people and 4 groups jago behindtherabbit cswinburne ggallone softsimu eldan tmmurali bayesian balicea Happybene wnpx kengg noano josepe dagmar jo_davies roys maburkitt phoenixzxl Jarman Lab VirtualPlants Plantandetc compneur
  • Gene duplication and the adaptive evolution of a classic genetic switch
    Nature, Vol. 449, No. 7163. (11 October 2007), pp. 677-681.
    by Chris T Hittinger, Sean B Carroll
    posted to adaptive duplication evolution regulatory by skumagai on 2008-06-09 14:29:14 as read along with 11 people and 2 groups druvus treangen mcphee dpollard dchughes djkt biomcgary blobbybirdman kjlipin clearbluespring bpcusack EisenLab cis-regulatory-evolution
  • Acetylation: a regulatory modification to rival phosphorylation?
    EMBO J, Vol. 19, No. 6. (15 March 2000), pp. 1176-1179.
    by T Kouzarides
    posted to acetylation kinase phosphorylation regulatory by seowu on 2007-07-17 07:18:24 as **
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