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Tag sequence_motif [18 articles]

Recent papers classified by the tag sequence_motif.
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  • Revealing posttranscriptional regulatory elements through network-level conservation.
    PLoS Comput Biol, Vol. 1, No. 7. (December 2005)
    by CS Chan, O Elemento, S Tavazoie
    posted to evolution network reconstruction regulatory sequence_motif by koller on 2006-08-25 01:39:07 as ** along with 4 people and 2 groups tharris balicea grahamc Garamonfok C. elegans / WormBase ParkinsonLab_at_MaRS
  • Linking DNA-binding proteins to their recognition sequences by using protein microarrays.
    Proc Natl Acad Sci U S A (19 June 2006)
    by Su-Wen W Ho, Ghil Jona, Christina T L T Chen, Mark Johnston, Michael Snyder
    posted to chip2 cis-regulation sequence_motif transcription by koller on 2006-08-31 01:31:53 as ** along with 4 people and 3 groups emilyhare samal nickluscombe kengg EisenLab EBI-regulation Plantandetc
  • Structure and evolution of transcriptional regulatory networks.
    Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 283-291.
    by MM Babu, NM Luscombe, L Aravind, M Gerstein, SA Teichmann
    posted to cis-regulation evolution regulatory sequence_motif by koller on 2006-09-11 05:35:16 as ** along with 6 people and 2 groups kaarsinogen tny kengg tvdbulck cjeans karfunkel Bioinformatics Plantandetc
  • Predicting gene expression from sequence.
    Cell, Vol. 117, No. 2. (16 April 2004), pp. 185-198.
    by MA Beer, S Tavazoie
    posted to bayesian cis-regulation reconstruction sequence_motif by koller on 2006-08-25 01:40:13 as **** along with 9 people and 5 groups tharris ana xwbcn adepace nickluscombe noano jrest phoenixzxl klo C. elegans / WormBase structural_bioinformatics Bioinformatics EisenLab EBI-regulation
  • Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo.
    BMC Bioinformatics, Vol. 3 (24 October 2002)
    by N Rajewsky, M Vergassola, U Gaul, ED Siggia
    posted to cis-regulation crm reconstruction sequence_motif by koller on 2006-08-25 22:13:10 as *** along with 6 people and 1 group isimpson ansobol indigoviolet adepace Stew csdhwang EisenLab
  • The amino-acid mutational spectrum of human genetic disease.
    Genome Biol, Vol. 4, No. 11. (2003)
    by D Vitkup, C Sander, GM Church
    posted to association phenotype regulatory sequence_motif by koller on 2006-08-31 07:31:38 as ** along with 2 people and 1 group ramensky cat_worth structural_bioinformatics
  • Evidence for an instructive mechanism of de novo methylation in cancer cells
    Nature Genetics, Vol. 38, No. 2. (24 January 2006), pp. 149-153.
    by Ilana Keshet, Yeshayahu Schlesinger, Shlomit Farkash, Eyal Rand, Merav Hecht, Eran Segal, Eli Pikarski, Richard A Young, Alain Niveleau, Howard Cedar, Itamar Simon
    posted to network regulatory sequence_motif by koller on 2006-09-19 01:34:56 as ** along with 3 people tabu nirfriedman rschulz
  • Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes.
    PLoS Comput Biol, Vol. 2, No. 8. (4 August 2006)
    by C Haynes, CJ Oldfield, F Ji, N Klitgord, ME Cusick, P Radivojac, VN Uversky, M Vidal, LM Iakoucheva
    posted to network network_motif p2p sequence_motif by koller on 2006-08-31 02:48:06 as *** along with 3 people and 1 group agustinarce indigoviolet carlk EisenLab
  • Profiling condition-specific, genome-wide regulation of mRNA stability in yeast.
    Proc Natl Acad Sci U S A, Vol. 102, No. 49. (6 December 2005), pp. 17675-17680.
    by BC Foat, SS Houshmandi, WM Olivas, HJ Bussemaker
    posted to network regulatory rna sequence_motif by koller on 2006-08-25 22:30:11 as **
  • Identifying regulatory networks by combinatorial analysis of promoter elements.
    Nat Genet, Vol. 29, No. 2. (October 2001), pp. 153-159.
    by Y Pilpel, P Sudarsanam, GM Church
    posted to cis-regulation expression modules sequence_motif by koller on 2006-08-31 07:10:12 as ** along with 6 people and 1 group imouthesmp troels_marstrand xwbcn wnpx noano windman83 Bioinformatics
  • Extensive low-affinity transcriptional interactions in the yeast genome.
    Genome Res (29 June 2006)
    by Amos Tanay
    posted to chip2 cis-regulation sequence_motif by koller on 2006-08-25 21:33:38 as ** along with 6 people and 1 group devin indigoviolet dpollard balicea lusk emptyhb EisenLab
  • Deciphering principles of transcription regulation in eukaryotic genomes
    Mol Syst Biol, Vol. 2, No. 1. (11 April 2006), pp. msb4100054-E1-msb4100054-E10.
    by Dat H Nguyen, Patrik D'Haeseleer
    posted to regulatory sequence_motif transcription cis-regulation by koller on 2006-08-30 22:45:22 as ** along with 5 people and 2 groups okarsligil pau reidy mikaelhuss isimpson Bioinformatics RNAtransport
  • Transcriptional networks: reverse-engineering gene regulation on a global scale.
    Curr Opin Microbiol, Vol. 7, No. 6. (December 2004), pp. 638-646.
    by G Chua, MD Robinson, Q Morris, TR Hughes
    posted to modules network reconstruction regulatory review sequence_motif transcription by koller on 2006-08-26 02:06:51 as **** along with 2 people and 1 group wnpx nickluscombe EBI-regulation
  • Multilevel modeling and inference of transcription regulation.
    J Comput Biol, Vol. 11, No. 2-3. (2004), pp. 357-375.
    by A Tanay, R Shamir
    posted to cis-regulation network reconstruction sequence_motif transcription by koller on 2006-08-25 21:40:09 as *** along with 1 person snuppepuppan
  • Computational methods for transcriptional regulation.
    Curr Opin Genet Dev, Vol. 15, No. 2. (April 2005), pp. 214-221.
    by ED Siggia
    posted to cis-regulation reconstruction review sequence_motif by koller on 2006-08-25 22:26:16 as *** along with 7 people and 2 groups barry dpollard bertelsen Borelli nklee balicea jjray Bioinformatics EisenLab
  • Global analysis of protein phosphorylation in yeast
    Nature, Vol. 438, No. 7068., pp. 679-684.
    by Jason Ptacek, Geeta Devgan, Gregory Michaud, Heng Zhu, Xiaowei Zhu, Joseph Fasolo, Hong Guo, Ghil Jona, Ashton Breitkreutz, Richelle Sopko, Rhonda R Mccartney, Martin C Schmidt, Najma Rachidi, Soo-Jung Lee, Angie S Mah, Lihao Meng, Michael JR Stark, David F Stern, Claudio De Virgilio, Mike Tyers, Brenda Andrews, Mark Gerstein, Barry Schweitzer, Paul F Predki, Michael Snyder
    posted to network regulatory sequence_motif signaling by koller on 2006-08-31 01:00:32 as **** along with 6 people and 1 group tmmurali tuck balabu nickluscombe carlk neils EBI-regulation
  • Modular Organization and Combinatorial Energetics of Proline–Tyrosine Nuclear Localization Signals
    PLoS Biology, Vol. 6, No. 6. (1 June 2008), e137.
    by Katherine E Süel, Hongmei Gu, Yuh M Chook
    posted to nuclear_import sequence_motif by biomcgary on 2008-06-03 14:59:07 as **
  • Analysis of computational approaches for motif discovery
    Algorithms for Molecular Biology, Vol. 1, No. 1. (19 May 2006), 8.
    by Nan Li, Martin Tompa
    posted to review sequence_comparison sequence_motif transcription_factor by barry on 2007-08-28 02:13:10 as ** along with 9 people and 2 groups ana tuck chad_davis dquest lusk nklee maximilianh xi03 csdhwang structural_bioinformatics Bioinformatics
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