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Tag sequencing [423 articles]

Recent papers classified by the tag sequencing.
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  • The impact of next-generation sequencing technology on genetics
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Elaine R Mardis
  • Comparative lesion sequencing provides insights into tumor evolution
    Proceedings of the National Academy of Sciences, Vol. 105, No. 11. (18 March 2008), pp. 4283-4288.
    by Sian Jones, Wei-Dong Chen, Giovanni Parmigiani, Frank Diehl, Niko Beerenwinkel, Tibor Antal, Arne Traulsen, Martin A Nowak, Christopher Siegel, Victor E Velculescu, Kenneth W Kinzler, Bert Vogelstein, Joseph Willis, Sanford D Markowitz
  • notes EDWARD BUCKLER PROFILE: Romping Through Maize Diversity
    Science, Vol. 322, No. 5898. (3 October 2008), pp. 40-41.
    by Elizabeth Pennisi
  • Next-generation DNA sequencing
    Nat Biotech, Vol. 26, No. 10. (October 2008), pp. 1135-1145.
    by Jay Shendure, Hanlee Ji
  • Bioinformatics challenges of new sequencing technology
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Mihai Pop, Steven L Salzberg
  • Generation and Characterization of SCARs by Cloning and Sequencing of RAPD Products: A Strategy for Species-specific Marker Development in Bamboo
    Annals of Botany, Vol. 95, No. 5. (16 April 2005), pp. 835-841.
    by MALAY Malay, Bhattacharya AMIK Samik, AMITA Amita
  • High-throughput oncogene mutation profiling in human cancer
    Nature Genetics, Vol. 39, No. 3. (11 February 2007), pp. 347-351.
    by Roman K Thomas, Alissa C Baker, Ralph M Debiasi, Wendy Winckler, Thomas Laframboise, William M Lin, Meng Wang, Whei Feng, Thomas Zander, Laura E Macconnaill, Jeffrey C Lee, Rick Nicoletti, Charlie Hatton, Mary Goyette, Luc Girard, Kuntal Majmudar, Liuda Ziaugra, Kwok-Kin Wong, Stacey Gabriel, Rameen Beroukhim, Michael Peyton, Jordi Barretina, Amit Dutt, Caroline Emery, Heidi Greulich, Kinjal Shah, Hidefumi Sasaki, Adi Gazdar, John Minna, Scott A Armstrong, Ingo K Mellinghoff, Stephen F Hodi, Glenn Dranoff, Paul S Mischel, Tim F Cloughesy, Stan F Nelson, Linda M Liau, Kirsten Mertz, Mark A Rubin, Holger Moch, Massimo Loda, William Catalona, Jonathan Fletcher, Sabina Signoretti, Frederic Kaye, Kenneth C Anderson, George D Demetri, Reinhard Dummer, Stephan Wagner, Meenhard Herlyn, William R Sellers, Matthew Meyerson, Levi A Garraway
  • EagleView: a genome assembly viewer for next-generation sequencing technologies.
    Genome research (11 June 2008)
    by Weichun Huang, Gabor T T Marth
  • Genetic Variation in an Individual Human Exome
    PLoS Genet, Vol. 4, No. 8. (2008), e1000160.
    by Pauline C Ng, Samuel Levy, Jiaqi Huang, Timothy B Stockwell, Brian P Walenz, Kelvin Li, Nelson Axelrod, Dana A Busam, Robert L Strausberg, Craig J Venter
  • Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing
    Nature Genetics, Vol. 40, No. 6. (27 April 2008), pp. 722-729.
    by Peter J Campbell, Philip J Stephens, Erin D Pleasance, Sarah O'Meara, Heng Li, Thomas Santarius, Lucy A Stebbings, Catherine Leroy, Sarah Edkins, Claire Hardy, Jon W Teague, Andrew Menzies, Ian Goodhead, Daniel J Turner, Christopher M Clee, Michael A Quail, Antony Cox, Clive Brown, Richard Durbin, Matthew E Hurles, Paul AW Edwards, Graham R Bignell, Michael R Stratton, Andrew P Futreal
  • Accurate Multiplex Polony Sequencing of an Evolved Bacterial Genome
    Science, Vol. 309, No. 5741. (09 September 2005), pp. 1728-1732.
    by Jay Shendure, Gregory J Porreca, Nikos B Reppas, Xiaoxia Lin, John P Mccutcheon, Abraham M Rosenbaum, Michael D Wang, Kun Zhang, Robi D Mitra, George M Church
  • The complete genome sequence of the gastric pathogen Helicobacter pylori.
    Nature, Vol. 388, No. 6642. (7 August 1997), pp. 539-547.
    by JF Tomb, O White, AR Kerlavage, RA Clayton, GG Sutton, RD Fleischmann, KA Ketchum, HP Klenk, S Gill, BA Dougherty, K Nelson, J Quackenbush, L Zhou, EF Kirkness, S Peterson, B Loftus, D Richardson, R Dodson, HG Khalak, A Glodek, K McKenney, LM Fitzegerald, N Lee, MD Adams, JC Venter
    posted to genomics pylori sequencing by xingxu on 2008-03-19 23:53:19 as ** along with 2 people evaf bjorns
  • A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes.
    Proc Natl Acad Sci U S A (13 July 2006)
    by Susanne M D M Goldberg, Justin Johnson, Dana Busam, Tamara Feldblyum, Steve Ferriera, Robert Friedman, Aaron Halpern, Hoda Khouri, Saul A A Kravitz, Federico M M Lauro, Kelvin Li, Yu-Hui H Rogers, Robert Strausberg, Granger Sutton, Luke Tallon, Torsten Thomas, Eli Venter, Marvin Frazier, J Craig C Venter
  • Microbial diversity in the deep sea and the underexplored "rare biosphere"
    Proc Natl Acad Sci U S A (31 July 2006)
    by Mitchell L L Sogin, Hilary G G Morrison, Julie A A Huber, David Mark M Welch, Susan M M Huse, Phillip R R Neal, Jesus M M Arrieta, Gerhard J J Herndl
  • An MCMC algorithm for haplotype assembly from whole-genome sequence data.
    Genome research, Vol. 18, No. 8. (August 2008), pp. 1336-1346.
    by V Bansal, AL Halpern, N Axelrod, V Bafna
    posted to sequencing mcmc haplotype_assembly by xingxu on 2008-12-11 17:04:42 as **
  • Characterizing the mouse ES cell transcriptome with Illumina sequencing.
    Genomics, Vol. 92, No. 4. (October 2008), pp. 187-194.
    posted to transcriptome stemcells sequencing by xingxu on 2008-10-06 22:35:03 as ** along with 1 person shikin
  • Next-generation sequencing transforms today's biology
    Nature Methods, Vol. 5, No. 1. (19 December 2007), pp. 16-18.
    by Stephan C Schuster
  • Genome sequencing in microfabricated high-density picolitre reactors
    Nature (31 July 2005)
    by Marcel Margulies, Michael Egholm, William E Altman, Said Attiya, Joel S Bader, Lisa A Bemben, Jan Berka, Michael S Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B Dewell, Lei Du, Joseph M Fierro, Xavier V Gomes, Brian C Godwin, Wen He, Scott Helgesen, Chun H Ho, Gerard P Irzyk, Szilveszter C Jando, Maria LI Alenquer, Thomas P Jarvie, Kshama B Jirage, Jong-Bum Kim, James R Knight, Janna R Lanza, John H Leamon, Steven M Lefkowitz, Ming Lei, Jing Li, Kenton L Lohman, Hong Lu, Vinod B Makhijani, Keith E Mcdade, Michael P Mckenna, Eugene W Myers, Elizabeth Nickerson, John R Nobile, Ramona Plant, Bernard P Puc, Michael T Ronan, George T Roth, Gary J Sarkis, Jan F Simons, John W Simpson, Maithreyan Srinivasan, Karrie R Tartaro, Alexander Tomasz, Kari A Vogt, Greg A Volkmer, Shally H Wang, Yong Wang, Michael P Weiner, Pengguang Yu, Richard F Begley, Jonathan M Rothberg
  • Next generation sequencing technologies
    Drug Discovery Today: Technologies, Vol. 2, No. 3. ( 2005), pp. 255-260.
    by Thomas Jarvie
    posted to prospective review sequencing by xingxu on 2008-01-11 19:22:47 as **
  • The marine viromes of four oceanic regions.
    PLoS Biol, Vol. 4, No. 11. (November 2006)
    by FE Angly, B Felts, M Breitbart, P Salamon, RA Edwards, C Carlson, AM Chan, M Haynes, S Kelley, H Liu, JM Mahaffy, JE Mueller, J Nulton, R Olson, R Parsons, S Rayhawk, CA Suttle, F Rohwer
  • Advanced sequencing technologies and their wider impact in microbiology
    J Exp Biol, Vol. 210, No. 9. (1 May 2007), pp. 1518-1525.
    by Neil Hall
  • The Diploid Genome Sequence of an Individual Human
    PLoS Biology, Vol. 5, No. 10. (1 October 2007), e254.
    by Samuel Levy, Granger Sutton, Pauline C Ng, Lars Feuk, Aaron L Halpern, Brian P Walenz, Nelson Axelrod, Jiaqi Huang, Ewen F Kirkness, Gennady Denisov, Yuan Lin, Jeffrey R Macdonald, Andy W Pang, Mary Shago, Timothy B Stockwell, Alexia Tsiamouri, Vineet Bafna, Vikas Bansal, Saul A Kravitz, Dana A Busam, Karen Y Beeson, Tina C Mcintosh, Karin A Remington, Josep F Abril, John Gill, Jon Borman, Yu-Hui Rogers, Marvin E Frazier, Stephen W Scherer, Robert L Strausberg, Craig J Venter
  • Applications of next-generation sequencing technologies in functional genomics.
    Genomics (11 August 2008)
    by Olena Morozova, Marco A A Marra
  • Mapping short DNA sequencing reads and calling variants using mapping quality scores.
    Genome research (19 August 2008)
    by Heng Li, Jue Ruan, Richard Durbin
  • Using pyrosequencing to shed light on deep mine microbial ecology.
    BMC Genomics, Vol. 7 (2006)
  • Primer: Sequencing—the next generation
    Nature Methods, Vol. 5, No. 1. (19 December 2007), pp. 15-15.
    by Nicole Rusk, Veronique Kiermer
    posted to review sequencing by xingxu on 2008-01-10 21:03:46 as **
  • Celebrity genomes alarm researchers
    Nature, Vol. 447, No. 7143. (23 May 2007), pp. 358-359.
    by Erika Check
  • notes Sequencing by hybridization (SBH): advantages, achievements, and opportunities.
    Adv Biochem Eng Biotechnol, Vol. 77 (2002), pp. 75-101.
    by R Drmanac, S Drmanac, G Chui, R Diaz, A Hou, H Jin, P Jin, S Kwon, S Lacy, B Moeur, J Shafto, D Swanson, T Ukrainczyk, C Xu, D Little
  • ZOOM! Zillions Of Oligos Mapped
    Bioinformatics (6 August 2008), btn416.
    by Hao Lin, Zefeng Zhang, Michael Q Zhang, Bin Ma, Ming Li
  • Core Signaling Pathways in Human Pancreatic Cancers Revealed by Global Genomic Analyses
    Science (4 September 2008), 1164368.
    by Sian Jones, Xiaosong Zhang, Williams D Parsons, Jimmy C Lin, Rebecca J Leary, Philipp Angenendt, Parminder Mankoo, Hannah Carter, Hirohiko Kamiyama, Antonio Jimeno, Seung-Mo Hong, Baojin Fu, Ming-Tseh Lin, Eric S Calhoun, Mihoko Kamiyama, Kimberly Walter, Tatiana Nikolskaya, Yuri Nikolsky, James Hartigan, Douglas R Smith, Manuel Hidalgo, Steven D Leach, Alison P Klein, Elizabeth M Jaffee, Michael Goggins, Anirban Maitra, Christine Iacobuzio-Donahue, James R Eshleman, Scott E Kern, Ralph H Hruban, Rachel Karchin, Nickolas Papadopoulos, Giovanni Parmigiani, Bert Vogelstein, Victor E Velculescu, Kenneth W Kinzler
  • Mapping and sequencing of structural variation from eight human genomes
    Nature, Vol. 453, No. 7191., pp. 56-64.
    by Jeffrey M Kidd, Gregory M Cooper, William F Donahue, Hillary S Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, Alice N Yamada, Peter Tsang, Tera L Newman, Eray Tüzün, Ze Cheng, Heather M Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin Mckernan, Lin Chen, Maika Malig, Joshua D Smith, Joshua M Korn, Steven A Mccarroll, David A Altshuler, Daniel A Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A Nickerson, James C Mullikin, Richard K Wilson, Laurakay Bruhn, Maynard V Olson, Rajinder Kaul, Douglas R Smith, Evan E Eichler
  • Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789
    PNAS, Vol. 104, No. 31. (31 July 2007), pp. 12825-12830.
    by Wu Wei, John H Mccusker, Richard W Hyman, Ted Jones, Ye Ning, Zhiwei Cao, Zhenglong Gu, Dan Bruno, Molly Miranda, Michelle Nguyen, Julie Wilhelmy, Caridad Komp, Raquel Tamse, Xiaojing Wang, Peilin Jia, Philippe Luedi, Peter J Oefner, Lior David, Fred S Dietrich, Yixue Li, Ronald W Davis, Lars M Steinmetz
  • The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing
    Science (1 May 2008), 1158441.
    by Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, Chong Shou, Debasish Raha, Mark Gerstein, Michael Snyder
  • Probabilistic base calling of Solexa sequencing data
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Jacques Rougemont, Arnaud Amzallag, Christian Iseli, Laurent Farinelli, Ioannis Xenarios, Felix Naef
  • RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
    Genome Res. (11 June 2008), gr.079558.108.
    by John Marioni, Cristopher Mason, Shrikant Mane, Matthew Stephens, Yoav Gilad
  • FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology
    Bioinformatics, Vol. 24, No. 15. (1 August 2008), pp. 1729-1730.
    by Anthony P Fejes, Gordon Robertson, Mikhail Bilenky, Richard Varhol, Matthew Bainbridge, Steven J Jones
  • Dynamic Regulation of Nucleosome Positioning in the Human Genome
    Cell, Vol. 132, No. 5. (7 March 2008), pp. 887-898.
    by Dustin E Schones, Kairong Cui, Suresh Cuddapah, Tae-Young Roh, Artem Barski, Zhibin Wang, Gang Wei, Keji Zhao
  • Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer.
    PLoS computational biology, Vol. 4, No. 4. (April 2008)
    by A Bashir, S Volik, C Collins, V Bafna, BJ Raphael
  • MicroRNA Discovery and Profiling in Human Embryonic Stem Cells by Deep Sequencing of Small RNA Libraries
    Stem Cells, Vol. 26, No. 10. (1 October 2008), pp. 2496-2505.
    by Merav Bar, Stacia K Wyman, Brian R Fritz, Junlin Qi, Kavita S Garg, Rachael K Parkin, Evan M Kroh, Ausra Bendoraite, Patrick S Mitchell, Angelique M Nelson, Walter L Ruzzo, Carol Ware, Jerald P Radich, Robert Gentleman, Hannele Ruohola-Baker, Muneesh Tewari
  • Molecular Epidemiology of Recent North American H5 and H7 Avian Influenza Viruses
    Avian Diseases, Vol. 47 (2003), pp. 95-104.
    by M García, JW Latimer, DL Suarez, RD Slemons, DE Swayne, ML Perdue
    posted to ai genetic migratory sequencing waterfowl wild by ucdmary on 2008-07-09 22:50:35 as **
  • Accurate whole human genome sequencing using reversible terminator chemistry
    Nature, Vol. 456, No. 7218. (6 November 2008), pp. 53-59.
  • Testing for Neutrality in Samples With Sequencing Errors
    Genetics, Vol. 179, No. 3. (1 July 2008), pp. 1409-1424.
    by Guillaume Achaz
  • Sequencing the nuclear genome of the extinct woolly mammoth
    Nature, Vol. 456, No. 7220. (20 November 2008), pp. 387-390.
    by Webb Miller, Daniela I Drautz, Aakrosh Ratan, Barbara Pusey, Ji Qi, Arthur M Lesk, Lynn P Tomsho, Michael D Packard, Fangqing Zhao, Andrei Sher, Alexei Tikhonov, Brian Raney, Nick Patterson, Kerstin Lindblad-Toh, Eric S Lander, James R Knight, Gerard P Irzyk, Karin M Fredrikson, Timothy T Harkins, Sharon Sheridan, Tom Pringle, Stephan C Schuster
  • The new paradigm of flow cell sequencing
    Genome Res., Vol. 18, No. 6. (1 June 2008), pp. 839-846.
    by Robert A Holt, Steven J Jones
  • The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing
    PLoS Biology, Vol. 6, No. 11. (1 November 2008), e280.
    by Les Dethlefsen, Sue Huse, Mitchell L Sogin, David A Relman
  • Genome sequencing in the fast lane
    Nature Methods, Vol. 3, No. 2., pp. 141-147.
    by Laura Bonetta
    posted to sequencing genome by treangen on 2008-11-20 14:28:30 as ** along with 1 person granujilla
  • High-throughput sequence alignment using Graphics Processing Units
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Michael Schatz, Cole Trapnell, Arthur Delcher, Amitabh Varshney
  • Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology
    BMC Genomics, Vol. 7 (24 October 2006), 272.
    by Foo Cheung, Brian J Ha