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Tag transcription_factor [208 articles]

Recent papers classified by the tag transcription_factor.
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  • Identification of an Arabidopsis transmembrane bZIP transcription factor involved in the endoplasmic reticulum stress response
    Biochemical and Biophysical Research Communications, Vol. 374, No. 2. (19 September 2008), pp. 242-247.
    by H Tajima, Y Iwata, M Iwano, S Takayama, N Koizumi
    posted to transmembrane transcription_factor leucine_zipper bzip arabidopsis by yarikson on 2008-12-19 16:21:47 as **
  • Post-translational regulation of plant bZIP factors.
    Trends in plant science (16 April 2008)
    by Katia Schütze, Klaus Harter, Christina Chaban
    posted to transcription_factor transcription regulatory_network regulation post-translational plants leucine_zipper bzip by yarikson on 2008-12-19 16:27:54 as ** along with 1 person imtechnology
  • Pea3 expression is regulated by FGF signaling in developing retina.
    Dev Dyn, Vol. 235, No. 2. (February 2006), pp. 327-335.
    by KL McCabe, C McGuire, TA Reh
    posted to fgf pea3 retina transcription_factor by uz_labu_laimi on 2007-09-03 20:39:24 as **
  • Specific localization of transcription factors in the chromatin of mouse mature spermatozoa.
    Mol Reprod Dev, Vol. 60, No. 1. (September 2001), pp. 97-106.
    by C Pittoggi, AR Magnano, I Sciamanna, R Giordano, R Lorenzini, C Spadafora
    posted to chromatin mouse spermatozoa transcription_factor by uz_labu_laimi on 2007-03-07 20:59:08 as ****
  • Transcription factors: structural families and principles of DNA recognition.
    Annu Rev Biochem, Vol. 61 (1992), pp. 1053-1095.
    by CO Pabo, RT Sauer
    posted to dna_recognition transcription_factor by uz_labu_laimi on 2007-03-07 04:33:22 as ** along with 3 people and 2 groups ana barry medic0747 structural_bioinformatics Bioinformatics
  • Regulatory Circuit of Human MicroRNA Biogenesis.
    PLoS Comput Biol, Vol. 3, No. 4. (20 April 2007)
    by Ji Lee, Zhihua Li, Rachel Brower-Sinning, Bino John
    posted to c-myb human microrna transcription_factor by uz_labu_laimi on 2007-05-28 21:50:52 as ** along with 7 people and 2 groups jfr tardigrade andersbj mtagaya jayster4 heliopais maralena Bioinformatics microRNA
  • The focal adhesion and nuclear targeting capacity of the LIM-containing lipoma-preferred partner (LPP) protein.
    J Biol Chem, Vol. 278, No. 4. (24 January 2003), pp. 2157-2168.
    by MM Petit, SM Meulemans, WJ Van de Ven
    posted to _partner focal_adhesion gene_expression lipoma-preferred lpp nucleus transcription_factor by uz_labu_laimi on 2007-05-11 15:57:56 as **
  • Glutathione peroxidases and redox-regulated transcription factors.
    Biol Chem, Vol. 387, No. 10-11. (v 2006), pp. 1329-1335.
    by R Brigelius-Flohé
    posted to glutathione_peroxidase gpx redox_regulation review transcription_factor by uz_labu_laimi on 2007-05-11 20:23:27 as ***
  • Reoxygenation-specific activation of the antioxidant transcription factor Nrf2 mediates cytoprotective gene expression in ischemia-reperfusion injury
    FASEB J., Vol. 20, No. 14. (1 December 2006), pp. 2624-2626.
    by Martin O Leonard, Niamh E Kieran, Katherine Howell, Melissa J Burne, Raghu Varadarajan, Saravanakumar Dhakshinamoorthy, Alan G Porter, Cliona O'Farrelly, Hamid Rabb, Cormac T Taylor
    posted to antioxidant gst ischemia-reperfusion nrf2 oxidative_stress reoxygenation transcription_factor by uz_labu_laimi on 2007-09-13 17:02:29 as read
  • The enigma of ATCE1, an acrosome-associated transcription factor.
    Dev Biol, Vol. 298, No. 1. (1 October 2006), pp. 201-211.
    by S Gil, D Yosef, N Golan, J Don
    posted to acrosome atce1 spermatozoa transcription_factor zygote by uz_labu_laimi on 2007-03-20 18:50:04 as **
  • An improved map of conserved regulatory sites for Saccharomyces cerevisiae.
    BMC Bioinformatics, Vol. 7, No. 1. (7 March 2006)
    by Kenzie D Macisaac, Ting Wang, Benjamin D Gordon, David K Gifford, Gary D Stormo, Ernest Fraenkel
    posted to motif transcription_factor yeast by tuck on 2007-01-05 14:23:52 as ** along with 7 people eckart_bindewald cconboy raiyar lusk nklee barwil kristallreiner
  • Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences
    Journal of Molecular Biology, Vol. 212, No. 4. (20 April 1990), pp. 563-578.
    by Philipp Bucher
    posted to pwm transcription_factor by tuck on 2006-12-19 03:35:40 as **
  • An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse.
    BMC Bioinformatics, Vol. 7, No. 1. (26 January 2006)
    by Ryung S Kim, Hongkai Ji, Wing H Wong
    posted to transcription_factor by tuck on 2006-12-19 03:37:15 as ** along with 3 people troels_marstrand gpalidwor minostro
  • Assessing computational tools for the discovery of transcription factor binding sites
    Nature Biotechnology, Vol. 23, No. 1. (06 January 2005), pp. 137-144.
    by Martin Tompa, Nan Li, Timothy L Bailey, George M Church, Bart D De Moor, Eleazar Eskin, Alexander V Favorov, Martin C Frith, Yutao Fu, James J Kent, Vsevolod J Makeev, Andrei A Mironov, William S Noble, Giulio Pavesi, Graziano Pesole, Mireille Régnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques v van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu
    posted to transcription transcription_factor by tuck on 2006-03-06 02:19:21 as ** along with 29 people and 6 groups daforerog yylin cambray emptyhb bryankr icases ana barry aalibes aprasad jfr chad_davis lyongu tabu dquest neveaire ranb johncumbers noano xiaobeizhao olympos GustavoLacerda nklee mdimon dandaman vietanh0 ep161302 nuin Stew structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT
  • Distinctive and indispensable roles of PU.1 in maintenance of hematopoietic stem cells and their differentiation.
    Blood, Vol. 106, No. 5. (1 September 2005), pp. 1590-1600.
    by H Iwasaki, C Somoza, H Shigematsu, EA Duprez, J Iwasaki-Arai, S Mizuno, Y Arinobu, K Geary, P Zhang, T Dayaram, ML Fenyus, S Elf, S Chan, P Kastner, CS Huettner, R Murray, DG Tenen, K Akashi
    posted to differentiation stemcell transcription_factor by tuck on 2006-02-22 16:23:32 as **
  • Acute myeloid leukemia induced by graded reduction of a lineage-specific transcription factor, PU.1.
    Nat Genet, Vol. 36, No. 6. (June 2004), pp. 624-630.
    by F Rosenbauer, K Wagner, JL Kutok, H Iwasaki, MM Le Beau, Y Okuno, K Akashi, S Fiering, DG Tenen
    posted to leukemia transcription_factor by tuck on 2006-02-22 15:04:19 as **
  • The PEA3 Ets transcription factor is a downstream target of the HER2/Neu receptor tyrosine kinase.
    Oncogene, Vol. 16, No. 3. (22 January 1998), pp. 301-310.
    by RC O'Hagan, JA Hassell
    posted to her2 transcription transcription_factor by tuck on 2006-02-07 13:52:13 as **
  • Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
    Bioinformatics, Vol. 15, No. 7. (1 July 1999), pp. 563-577.
    by Gz Hertz, Gd Stormo
    posted to regulatory transcription_factor by tuck on 2006-12-14 03:24:18 as ** along with 5 people and 1 group yylin indigoviolet dquest lusk chad_davis EisenLab
  • A global role for EKLF in definitive and primitive erythropoiesis.
    Blood (27 December 2005)
    by Denise Hodge, Elise Coghill, Janelle Keys, Tina Maguire, Belinda Hartmann, Alasdair McDowall, Mitchell Weiss, Sean Grimmond, Andrew Perkins
    posted to eklf erythropoiesis transcription transcription_factor by tuck on 2006-02-14 15:05:18 as **
  • Regulation of Her2/neu promoter activity by the ETS transcription factor, ER81.
    J Cell Biochem, Vol. 86, No. 1. (2002), pp. 174-183.
    by DG Bosc, R Janknecht
    posted to her2 target transcription_factor by tuck on 2006-02-07 14:00:46 as **
  • Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors,
    Journal of Molecular Biology, Vol. 309, No. 1. (25 May 2001), pp. 99-120.
    by Alexander E Kel, Olga V Kel-Margoulis, Peggy J Farnham, Stephanie M Bartley, Edgar Wingender, Michael Q Zhang
    posted to module regulation transcription transcription_factor by tuck on 2006-03-06 02:13:51 as ** along with 1 person nklee
  • Forkhead Box Transcription Factor FOXO3a Regulates Estrogen Receptor Alpha Expression and Is Repressed by the Her-2/neu/Phosphatidylinositol 3-Kinase/Akt Signaling Pathway
    Mol. Cell. Biol., Vol. 24, No. 19. (1 October 2004), pp. 8681-8690.
    by Shangqin Guo, Gail E Sonenshein
    posted to her2 target transcription_factor by tuck on 2006-02-07 13:54:36 as **
  • The essential haematopoietic transcription factor Scl is also critical for neuronal development.
    Eur J Neurosci, Vol. 23, No. 7. (April 2006), pp. 1677-1689.
    by CK Bradley, EA Takano, MA Hall, JR Göthert, AR Harvey, CG Begley, JA van Eekelen
    posted to hematopoiesis transcription_factor by tuck on 2006-05-04 02:00:39 as **
  • Differential sensitivities of transcription factor target genes underlie cell type-specific gene expression profiles.
    Proc Natl Acad Sci U S A (16 October 2006)
    by Kirby D D Johnson, Shin-Il I Kim, Emery H H Bresnick
    posted to transcription_factor by tuck on 2006-12-14 12:27:27 as ** along with 1 person and 1 group brant EisenLab
  • Analysis of computational approaches for motif discovery
    Algorithms for Molecular Biology, Vol. 1, No. 1. (19 May 2006), 8.
    by Nan Li, Martin Tompa
    posted to algorithm motif transcription_factor by tuck on 2006-06-13 12:09:42 as ** along with 9 people and 2 groups ana barry chad_davis dquest lusk nklee maximilianh xi03 csdhwang structural_bioinformatics Bioinformatics
  • MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model.
    Genome Biol, Vol. 5, No. 12. (2004)
    by AM Moses, DY Chiang, DA Pollard, VN Iyer, MB Eisen
    posted to transcription transcription_factor by tuck on 2006-09-09 03:16:42 as ** along with 4 people and 2 groups indigoviolet lusk Garamonfok cisevol EisenLab cis-regulatory-evolution
  • Genetic regulators of large-scale transcriptional signatures in cancer
    Nature Genetics, Vol. 38, No. 4. (05 March 2006), pp. 421-430.
    by Adam S Adler, Meihong Lin, Hugo Horlings, Dimitry SA Nuyten, Marc J van de Vijver, Howard Y Chang
    posted to cgh copy_number microarray transcription_factor by tuck on 2006-04-28 06:13:46 as ** along with 5 people huiminC jfr ccots Ao_Li2007 oelemento
  • Shear stress regulates endothelial nitric-oxide synthase promoter activity through nuclear factor kappaB binding.
    J Biol Chem, Vol. 279, No. 1. (2 January 2004), pp. 163-168.
    by ME Davis, IM Grumbach, T Fukai, A Cutchins, DG Harrison
    posted to endothelial enos erk12 expression nfkb shear transcription_factor by tsjipko on 2007-09-24 09:05:56 as **
  • Integration of flow-dependent endothelial phenotypes by Kruppel-like factor 2
    J. Clin. Invest., Vol. 116, No. 1. (1 January 2006), pp. 49-58.
    by Kush M Parmar, Benjamin H Larman, Guohao Dai, Yuzhi Zhang, Eric T Wang, Sripriya N Moorthy, Johannes R Kratz, Zhiyong Lin, Mukesh K Jain, Michael A Gimbrone, Guillermo Garcia-Cardena
    posted to atherosclerosis klf2 mechanoresponse transcription_factor by tsjipko on 2006-10-23 15:33:55 as **
  • Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, Vol. 290, No. 5499. (15 December 2000), pp. 2105-2110.
    by JL Riechmann, J Heard, G Martin, L Reuber, C Jiang, J Keddie, L Adam, O Pineda, OJ Ratcliffe, RR Samaha, R Creelman, M Pilgrim, P Broun, JZ Zhang, D Ghandehari, BK Sherman, G Yu
    posted to comparative plant transcription_factor by tny on 2006-06-13 13:35:10 as ** along with 4 people and 2 groups nickluscombe kengg Hummel hplatero EBI-regulation Plantandetc
  • A metabolic enzyme doing double duty as a transcription factor
    BioEssays, Vol. 27, No. 5. (2005), pp. 467-471.
    by Anjana Bhardwaj, Miles F Wilkinson
    posted to enzyme_and_transcription_factor transcription_factor by tny on 2006-12-06 09:57:54 as **
  • Structure and evolution of transcriptional regulatory networks.
    Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 283-291.
    by MM Babu, NM Luscombe, L Aravind, M Gerstein, SA Teichmann
    posted to transcription_factor by tny on 2006-09-18 16:28:42 as ** along with 6 people and 2 groups kaarsinogen kengg koller tvdbulck cjeans karfunkel Bioinformatics Plantandetc
  • Identification of InuR, a new Zn(II)2Cys6 transcriptional activator involved in the regulation of inulinolytic genes in Aspergillus niger.
    Mol Genet Genomics, Vol. 279, No. 1. (January 2008), pp. 11-26.
    by XL Yuan, JA Roubos, CA van den Hondel, AF Ram
    posted to aspergillus sugar transcription_factor by stajich on 2008-03-17 00:48:32 as ** along with 1 group Berkeley Mycology
  • Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106.
    by Emily E Hare, Brant K Peterson, Venky N Iyer, Rudolf Meier, Michael B Eisen
    posted to binding_site drosophila even-skipped evodevo evolution promotor transcription_factor by stajich on 2008-06-28 18:16:38 as ** along with 7 people and 2 groups maximilianh Stew emptyhb djkt pradiptaray cisevol caseybrown Berkeley Mycology cis-regulatory-evolution
  • A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors
    Proceedings of the National Academy of Sciences, Vol. 103, No. 27. (5 July 2006), pp. 10352-10357.
    by Hildur V Colot, Gyungsoon Park, Gloria E Turner, Carol Ringelberg, Christopher M Crew, Liubov Litvinkova, Richard L Weiss, Katherine A Borkovich, Jay C Dunlap
    posted to knock-out neurospora transcription transcription_factor by stajich on 2008-01-08 04:48:58 as ** along with 1 group Berkeley Mycology
  • Fungal CSL transcription factors
    BMC Genomics, Vol. 8 (13 July 2007), 233.
    by Martin Prevorovsky, Frantisek Puta, Petr Folk
    posted to fungal notch transcription_factor by stajich on 2008-01-11 19:44:31 as ** along with 1 person and 2 groups GustavoLacerda EisenLab Berkeley Mycology
  • Transcription Factor Substitution during the Evolution of Fungal Ribosome Regulation
    Molecular Cell, Vol. 29, No. 5. (14 March 2008), pp. 552-562.
    by Herve Hogues, Hugo Lavoie, Adnane Sellam, Maria Mangos, Terry Roemer, Enrico Purisima, Andre Nantel, Malcolm Whiteway
    posted to evolution fungi ribosomes transcription_factor by stajich on 2008-05-05 02:58:13 as ** along with 1 person and 1 group zwang Berkeley Mycology
  • Transcriptional repression coordinates the temporal switch from motor to serotonergic neurogenesis
    Nature Neuroscience, Vol. 10, No. 11. (07 October 2007), pp. 1433-1439.
    by John Jacob, Anna L Ferri, Christopher Milton, Fabrice Prin, Patrick Pla, Wei Lin, Anthony Gavalas, Siew-Lan Ang, James Briscoe
    posted to development serotonin transcription_factor by psique on 2007-11-10 18:48:17 as read
  • SoxB transcription factors specify neuroectodermal lineage choice in ES cells
    Molecular and Cellular Neuroscience, Vol. 27, No. 3. (November 2004), pp. 332-342.
    by Suling Zhao, Jennifer Nichols, Austin G Smith, Meng Li
    posted to development stem_cells transcription_factor by psique on 2007-12-14 12:44:20 as read
  • An integrated software system for analyzing ChIP-chip and ChIP-seq data
    Nature Biotechnology, Vol. 26, No. 11. (02 November 2008), pp. 1293-1300.
    by Hongkai Ji, Hui Jiang, Wenxiu Ma, David S Johnson, Richard M Myers, Wing H Wong
    posted to transcription_factor transcription gene_expression by psique on 2008-12-01 16:56:49 as * along with 12 people and 1 group malcook rschulz mcm behindtherabbit renatomilani polivares guhjy inesdesantiago pengchy kengg bais idonaldson BenosLab
  • notes Functional Specificity of a Hox Protein Mediated by the Recognition of Minor Groove Structure
    Cell, Vol. 131, No. 3. (2 November 2007), pp. 530-543.
    by Rohit Joshi, Jonathan M Passner, Remo Rohs, Rinku Jain, Alona Sosinsky, Michael A Crickmore, Vinitha Jacob, Aneel K Aggarwal, Barry Honig, Richard S Mann
    posted to code columbia structure transcription_factor by oelemento on 2007-11-01 22:39:00 as read along with 3 people and 1 group emptyhb cwbrown blobbybirdman EisenLab
  • Mouse development with a single E2F activator
    Nature (25 June 2008)
    by Shih-Yin Tsai, Rene Opavsky, Nidhi Sharma, Lizhao Wu, Shan Naidu, Eric Nolan, Enrique Feria-Arias, Cynthia Timmers, Jana Opavska, Alain de Bruin, Jean-Leon Chong, Prashant Trikha, Soledad A Fernandez, Paul Stromberg, Thomas J Rosol, Gustavo Leone
    posted to e2f gene_expression transcription_factor by oelemento on 2008-08-31 00:52:53 as ** along with 1 person mrochman
  • notes Variable Control of Ets-1 DNA Binding by Multiple Phosphates in an Unstructured Region
    Science, Vol. 309, No. 5731. (1 July 2005), pp. 142-145.
    by Miles A Pufall, Gregory M Lee, Mary L Nelson, Hyun-Seo Kang, Algirdas Velyvis, Lewis E Kay, Lawrence P Mcintosh, Barbara J Graves
    posted to ets transcription_factor by oelemento on 2008-06-08 19:16:07 as read
  • DNA Binding Specificity of Different STAT Proteins. COMPARISON OF IN VITRO SPECIFICITY WITH NATURAL TARGET SITES
    J. Biol. Chem., Vol. 276, No. 9. (23 February 2001), pp. 6675-6688.
    by Georg B Ehret, Patrick Reichenbach, Ulrike Schindler, Curt M Horvath, Stefan Fritz, Markus Nabholz, Philipp Bucher
    posted to transcription_factor stat by oelemento on 2009-01-07 00:18:09 as **
  • Huntingtin interacting protein 1 modulates the transcriptional activity of nuclear hormone receptors.
    J Cell Biol, Vol. 170, No. 2. (18 July 2005), pp. 191-200.
    by IG Mills, L Gaughan, C Robson, T Ross, S McCracken, J Kelly, DE Neal
    posted to hip1 huntingtin_interacting_protein transcription_factor by marcora on 2005-08-29 20:12:24 as **** along with 1 person inbetweener
  • Adaptive evolution of transcription factor binding sites.
    BMC Evol Biol, Vol. 4, No. 1. (28 October 2004)
    by J Berg, S Willmann, M Lässig
    posted to dna_binding e_coli protein-dna_interaction transcription_factor by kaarsinogen on 2006-07-17 19:07:37 as ** along with 4 people and 1 group bmajoros jjray discreteonyxorb cisevol cis-regulatory-evolution
  • Connecting protein structure with predictions of regulatory sites.
    Proc Natl Acad Sci U S A (16 April 2007)
    by Alexandre V V Morozov, Eric D D Siggia
    posted to dna_binding protein-dna_interaction protein_structure transcription_factor by kaarsinogen on 2007-06-01 22:37:08 as *** along with 4 people and 2 groups ana aalibes johncumbers lusk structural_bioinformatics Bioinformatics
  • rSNP_Guide, a database system for analysis of transcription factor binding to DNA with variations: application to genome annotation.
    Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 118-121.
    by JV Ponomarenko, TI Merkulova, GV Orlova, ON Fokin, EV Gorshkova, AS Frolov, VP Valuev, MP Ponomarenko
    posted to dna_binding protein-dna_interaction transcription transcription_factor by kaarsinogen on 2005-10-14 20:57:18 as ***
  • How do site-specific DNA-binding proteins find their targets?
    Nucl. Acids Res., Vol. 32, No. 10. (3 June 2004), pp. 3040-3052.
    by Stephen E Halford, John F Marko
    posted to dna_binding protein-dna_interaction transcription_factor by kaarsinogen on 2007-06-01 21:29:15 as *** along with 2 people JintuRabha chrn
  • Structure-based prediction of DNA target sites by regulatory proteins.
    Proteins, Vol. 35, No. 1. (1 April 1999), pp. 114-131.
    by H Kono, A Sarai
    posted to dna_binding protein-dna_interaction protein_structure transcription_factor by kaarsinogen on 2006-01-25 22:44:19 as ** along with 1 person medic0747
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