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GustavoLacerda's library [323 articles]

Recent papers added to GustavoLacerda's library.
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  • Incompatibility of Nuclear and Mitochondrial Genomes Causes Hybrid Sterility between Two Yeast Species.
    Cell, Vol. 135, No. 6. (12 December 2008), pp. 1065-1073.
    by HY Lee, JY Chou, L Cheong, NH Chang, SY Yang, JY Leu
    posted to fungi by GustavoLacerda on 2009-01-05 16:16:43 as ** along with 1 person jbhiatt
  • I Am Not a Scientist, I Am a Number
    PLoS Comput Biol, Vol. 4, No. 12. (26 December 2008), e1000247.
    by Philip E Bourne, Lynn J Fink
  • Where Do Introns Come From?
    PLoS Biology, Vol. 6, No. 11. (1 November 2008), e283.
    by Francesco Catania, Michael Lynch
  • High-Resolution Analysis of the 5′-End Transcriptome Using a Next Generation DNA Sequencer
    PLoS ONE, Vol. 4, No. 1. (1 January 2009), e4108.
    by Shin-Ichi Hashimoto, Wei Qu, Budrul Ahsan, Katsumi Ogoshi, Atsushi Sasaki, Yoichiro Nakatani, Yongjun Lee, Masako Ogawa, Akio Ametani, Yutaka Suzuki, Sumio Sugano, Clarence C Lee, Robert C Nutter, Shinichi Morishita, Kouji Matsushima
  • A Metagenomic Survey of Microbes in Honey Bee Colony Collapse Disorder.
    Science (6 September 2007)
    by Diana L L Cox-Foster, Sean Conlan, Edward C C Holmes, Gustavo Palacios, Jay D D Evans, Nancy A A Moran, Phenix-Lan L Quan, Thomas Briese, Mady Hornig, David M M Geiser, Vince Martinson, Dennis Vanengelsdorp, Abby L L Kalkstein, Andrew Drysdale, Jeffrey Hui, Junhui Zhai, Liwang Cui, Stephen K K Hutchison, Jan Fredrik F Simons, Michael Egholm, Jeffery S S Pettis, W Ian I Lipkin
  • A Bioinformatician's Guide to Metagenomics
    Microbiol. Mol. Biol. Rev., Vol. 72, No. 4. (1 December 2008), pp. 557-578.
    by Victor Kunin, Alex Copeland, Alla Lapidus, Konstantinos Mavromatis, Philip Hugenholtz
  • Real-Time DNA Sequencing from Single Polymerase Molecules
    Science (20 November 2008), 1162986.
    by John Eid, Adrian Fehr, Jeremy Gray, Khai Luong, John Lyle, Geoff Otto, Paul Peluso, David Rank, Primo Baybayan, Brad Bettman, Arkadiusz Bibillo, Keith Bjornson, Bidhan Chaudhuri, Frederick Christians, Ronald Cicero, Sonya Clark, Ravindra Dalal, Alex Dewinter, John Dixon, Mathieu Foquet, Alfred Gaertner, Paul Hardenbol, Cheryl Heiner, Kevin Hester, David Holden, Gregory Kearns, Xiangxu Kong, Ronald Kuse, Yves Lacroix, Steven Lin, Paul Lundquist, Congcong Ma, Patrick Marks, Mark Maxham, Devon Murphy, Insil Park, Thang Pham, Michael Phillips, Joy Roy, Robert Sebra, Gene Shen, Jon Sorenson, Austin Tomaney, Kevin Travers, Mark Trulson, John Vieceli, Jeffrey Wegener, Dawn Wu, Alicia Yang, Denis Zaccarin, Peter Zhao, Frank Zhong, Jonas Korlach, Stephen Turner
  • High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies
    BMC Genomics, Vol. 9 (16 December 2008), 603.
    by Jean-Marc, Patrick Wincker
  • A new systematic computational approach to predicting target genes of transcription factors
    Nucl. Acids Res. (18 June 2007), gkm454.
    by Xinbin Dai, Ji He, Xuechun Zhao
    posted to regulation by GustavoLacerda on 2008-12-24 04:36:27 as ** along with 3 people lptolik druvus cabbagezs
  • De novo fragment assembly with short mate-paired reads: Does the read length matter?
    Genome research (3 December 2008)
    by Mark Jp J Chaisson, Dumitru Brinza, Pavel A A Pevzner
  • Differentiating Protein-Coding and Noncoding RNA: Challenges and Ambiguities
    PLoS Comput Biol, Vol. 4, No. 11. (28 November 2008), e1000176.
    by Marcel E Dinger, Ken C Pang, Tim R Mercer, John S Mattick
  • c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Katerina Kechris, Hao Li
  • GENETICS: It's the Sequence, Stupid!
    Science, Vol. 322, No. 5900. (17 October 2008), pp. 380-381.
    by Hilary A Coller, Leonid Kruglyak
  • Species-Specific Transcription in Mice Carrying Human Chromosome 21
    Science (11 September 2008), 1160930.
    by Michael D Wilson, Nuno L Barbosa-Morais, Dominic Schmidt, Caitlin M Conboy, Lesley Vanes, Victor L Tybulewicz, Elizabeth M Fisher, Simon Tavare, Duncan T Odom
  • Discovery of novel transcription factor binding sites by statistical overrepresentation.
    Nucleic Acids Res, Vol. 30, No. 24. (15 December 2002), pp. 5549-5560.
    by S Sinha, M Tompa
  • Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences
    Cell, Vol. 135, No. 2. (17 October 2008), pp. 216-226.
  • A GAL4-like protein is involved in the switch between biotrophic and necrotrophic phases of the infection process of Colletotrichum lindemuthianum on common bean. .
    The Plant cell, Vol. 12, No. 9. (September 2000), pp. 1579-1590.
    by M Dufresne, S Perfect, AL Pellier, JA Bailey, T Langin
    posted to fungi by GustavoLacerda on 2008-12-03 04:43:49 as **
  • <i>Colletotrichum</i>: tales of forcible entry, stealth, transient confinement and breakout
    Molecular Plant Pathology, Vol. 2, No. 4. (2001), pp. 187-198.
    by Akinwunmi O Latunde-Dada
    posted to fungi by GustavoLacerda on 2008-12-03 04:38:10 as **
  • Nutrition acquisition strategies during fungal infection of plants
    FEMS Microbiology Letters, Vol. 266, No. 1. (2007), pp. 65-74.
    by Hege H Divon, Robert Fluhr
    posted to fungi by GustavoLacerda on 2008-12-03 04:35:40 as ** along with 1 person Jporci
  • Identification of a second family of genes in Moniliophthora perniciosa, the causal agent of witches' broom disease in cacao, encoding necrosis-inducing proteins similar to cerato-platanins.
    Mycological research (30 August 2008)
    by Gustavo Zaparoli, Odalys García G Cabrera, Francisco Javier J Medrano, Ricardo Tiburcio, Gustavo Lacerda, Gonçalo Guimarães G Pereira
    posted to genefinding genefamilies fungi cerato by GustavoLacerda on 2008-11-30 23:24:49 as *****
  • CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Matthew Hestand, Michiel van Galen, Michel Villerius, Gert J van Ommen, Johan den Dunnen, Peter ' Hoen
  • Sequencing of natural strains of Arabidopsis thaliana with short reads.
    Genome research (29 October 2008)
    by Stephan Ossowski, Korbinian Schneeberger, Richard M M Clark, Christa Lanz, Norman Warthmann, Detlef Weigel
  • Conrad: Gene prediction using conditional random fields
    Genome Res., Vol. 17, No. 9. (1 September 2007), pp. 1389-1398.
    by David Decaprio, Jade P Vinson, Matthew D Pearson, Philip Montgomery, Matthew Doherty, James E Galagan
  • Whole-genome sequencing and assembly with high-throughput, short-read technologies.
    PLoS ONE, Vol. 2 (2007)
  • 454 sequencing put to the test using the complex genome of barley
    BMC Genomics, Vol. 7 (26 October 2006), 275.
    by Thomas Wicker, Edith Schlagenhauf, Andreas Graner, Timothy J Close, Beat Keller, Nils Stein
  • Stable genetic transformation of castor (Ricinus communis L.) via particle gun-mediated gene transfer using embryo axes from mature seeds
    Plant Cell Reports, Vol. 27, No. 9. (September 2008), pp. 1509-1519.
    posted to ricinus by GustavoLacerda on 2008-11-25 13:22:05 as **
  • Metabolic Engineering of Fatty Acid Biosynthesis in Plants
    Metabolic Engineering (January 2002), pp. 12-21.
    by JJ Thelen, JB Ohlrogge
    posted to ricinus by GustavoLacerda on 2008-11-25 13:19:51 as **
  • Role of biotechnological interventions in the improvement of castor (Ricinus communis L.) and Jatropha curcas L.
    Biotechnology Advances, Vol. 26, No. 5. (September 2008), pp. 424-435.
    by M Sujatha, T Reddy, M Mahasi
    posted to ricinus by GustavoLacerda on 2008-11-25 11:46:37 as **
  • Interconvertible Lac Repressor–DNA Loops Revealed by Single-Molecule Experiments
    PLoS Biology, Vol. 6, No. 9. (1 September 2008), e232.
    by Oi K Wong, Martin Guthold, Dorothy A Erie, Jeff Gelles
    posted to regulation by GustavoLacerda on 2008-11-25 01:03:59 as **
  • The diploid genome sequence of an Asian individual
    Nature, Vol. 456, No. 7218. (6 November 2008), pp. 60-65.
    by Jun Wang, Wei Wang, Ruiqiang Li, Yingrui Li, Geng Tian, Laurie Goodman, Wei Fan, Junqing Zhang, Jun Li, Juanbin Zhang, Yiran Guo, Binxiao Feng, Heng Li, Yao Lu, Xiaodong Fang, Huiqing Liang, Zhenglin Du, Dong Li, Yiqing Zhao, Yujie Hu, Zhenzhen Yang, Hancheng Zheng, Ines Hellmann, Michael Inouye, John Pool, Xin Yi, Jing Zhao, Jinjie Duan, Yan Zhou, Junjie Qin, Lijia Ma, Guoqing Li, Zhentao Yang, Guojie Zhang, Bin Yang, Chang Yu, Fang Liang, Wenjie Li, Shaochuan Li, Dawei Li, Peixiang Ni, Jue Ruan, Qibin Li, Hongmei Zhu, Dongyuan Liu, Zhike Lu, Ning Li, Guangwu Guo, Jianguo Zhang, Jia Ye, Lin Fang, Qin Hao, Quan Chen, Yu Liang, Yeyang Su, A San, Cuo Ping, Shuang Yang, Fang Chen, Li Li, Ke Zhou, Hongkun Zheng, Yuanyuan Ren, Ling Yang, Yang Gao, Guohua Yang, Zhuo Li, Xiaoli Feng, Karsten Kristiansen, Gane K Wong, Rasmus Nielsen, Richard Durbin, Lars Bolund, Xiuqing Zhang, Songgang Li, Huanming Yang, Jian Wang
  • ZOOM! Zillions Of Oligos Mapped
    Bioinformatics (6 August 2008), btn416.
    by Hao Lin, Zefeng Zhang, Michael Q Zhang, Bin Ma, Ming Li
  • Large-scale assignment of orthology: back to phylogenetics?
    Genome Biology, Vol. 9, No. 10. (2008)
    by Toni Gabaldon
  • Support Vector Machines and Kernels for Computational Biology
    PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000173.
    by Asa Ben-Hur, Cheng S Ong, Sören Sonnenburg, Bernhard Schölkopf, Gunnar Rätsch
  • Chitin and chitosan from Basidiomycetes.
    International journal of biological macromolecules, Vol. 43, No. 1. (1 July 2008), pp. 8-12.
  • Fruiting body and soil rDNA sampling detects complementary assemblage of Agaricomycotina (Basidiomycota, Fungi) in a hemlock-dominated forest plot in southern Ontario
    Molecular Ecology, Vol. 17, No. 13. (July 2008), pp. 3037-3050.
    by Teresita M Porter, Jane E Skillman, Jean-Marc Moncalvo
  • Double-stranded RNA elements associated with the MVX disease of Agaricus bisporus.
    Mycol Res, Vol. 107, No. Pt 2. (February 2003), pp. 147-154.
    by HM Grogan, BA Adie, RH Gaze, MP Challen, PR Mills
  • Conserved Secondary Structures in Aspergillus
    PLoS ONE, Vol. 3, No. 7. (30 July 2008), e2812.
    by Abigail M Mcguire, James E Galagan
  • RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription
    Science (17 May 2007), 1138341.
    by Philipp Kapranov, Jill Cheng, Sujit Dike, David A Nix, Radharani Duttagupta, Aarron T Willingham, Peter F Stadler, Jana Hertel, Joerg Hackermueller, Ivo L Hofacker, Ian Bell, Evelyn Cheung, Jorg Drenkow, Erica Dumais, Sandeep Patel, Gregg Helt, Madhavan Ganesh, Srinka Ghosh, Antonio Piccolboni, Victor Sementchenko, Hari Tammana, Thomas R Gingeras
  • Inferring Noncoding RNA Families and Classes by Means of Genome-Scale Structure-Based Clustering
    PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e65.
    by Sebastian Will, Kristin Reiche, Ivo L Hofacker, Peter F Stadler, Rolf Backofen
  • MicroRNA regulation of messenger-like noncoding RNAs: a network of mutual microRNA control
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Yi Zhao, Shunmin He, Changning Liu, Songwei Ru, Haitao Zhao, Zhen Yang, Pengcheng Yang, Xiongyin Yuan, Shiwei Sun, Dongbo Bu, Jiefu Huang, Geir Skogerbø, Runsheng Chen
  • Discovering microRNAs from deep sequencing data using miRDeep
    Nature Biotechnology, Vol. 26, No. 4., pp. 407-415.
    by Marc R Friedländer, Wei Chen, Catherine Adamidi, Jonas Maaskola, Ralf Einspanier, Signe Knespel, Nikolaus Rajewsky
  • Direct and sensitive miRNA profiling from low-input total RNA.
    RNA (14 November 2006)
    by Hui Wang, Robert A A Ach, Bo Curry
  • A hexanucleotide element directs microRNA nuclear import.
    Science, Vol. 315, No. 5808. (5 January 2007), pp. 97-100.
    by HW Hwang, EA Wentzel, JT Mendell
  • Genomics of microRNA.
    Trends Genet (27 January 2006)
    by V Narry N Kim, Jin-Wu W Nam
  • MicroRNAs: unicellular organisms also have their share
    Nat Rev Genet, Vol. 8, No. 6. (June 2007), pp. 406-406.
    by Francesca Pentimalli
    posted to regulation microrna by GustavoLacerda on 2008-11-23 22:06:31 as ** along with 1 person stajich
  • RNA world - the dark matter of evolutionary genomics
    Journal of Evolutionary Biology, Vol. 19, No. 6. (2006), pp. 1768-1774.
  • Intronic microRNA precursors that bypass Drosha processing
    Nature (24 June 2007)
    by Graham J Ruby, Calvin H Jan, David P Bartel
  • Evolution of microRNAs and their targets: Are all microRNAs biologically relevant?
    Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, Vol. In Press, Uncorrected Proof
    by Michael J Axtell
  • Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
    Genome Res. (19 February 2008), gr.7179508.
    by Ryan D Morin, Michael D O'Connor, Malachi Griffith, Florian Kuchenbauer, Allen Delaney, Anna-Liisa Prabhu, Yongjun Zhao, Helen Mcdonald, Thomas Zeng, Martin Hirst, Connie J Eaves, Marco A Marra
  • Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends.
    Nature biotechnology (9 June 2008)
    by Marcelo A A German, Manoj Pillay, Dong-Hoon H Jeong, Amit Hetawal, Shujun Luo, Prakash Janardhanan, Vimal Kannan, Linda A A Rymarquis, Kan Nobuta, Rana German, Emanuele De Paoli, Cheng Lu, Gary Schroth, Blake C C Meyers, Pamela J J Green
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