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cerca's library [175 articles]

Recent papers added to cerca's library.
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  • BIOLOGICAL ROLES OF PROTEASES IN PARASITIC PROTOZOA
    Annual Review of Biochemistry, Vol. 71, No. 1. (2002), pp. 275-305.
    by Michael Klemba, Daniel E Goldberg
    posted to tbrucei_proteasome tbrucei proteasome by cerca on 2009-01-08 20:39:27 as **
  • The role of proteolysis during differentiation of Trypanosoma brucei from the bloodstream to the procyclic form
    Molecular and Biochemical Parasitology, Vol. 93, No. 1. (15 May 1998), pp. 11-22.
    by M Mutomba
    posted to proteasome_drug proteasome drug by cerca on 2009-01-08 20:38:19 as **
  • The proteasome as a potential target for chemotherapy of African trypanosomiasis
    Drug Development Research, Vol. 68, No. 5. (2007), pp. 205-212.
    by Dietmar Steverding
    posted to proteasome_drug proteasome drug by cerca on 2009-01-08 20:37:48 as **
  • The ubiquitin-proteasome proteolytic pathway: destruction for the sake of construction.
    Physiol Rev, Vol. 82, No. 2. (April 2002), pp. 373-428.
    by MH Glickman, A Ciechanover
    posted to proteasome by cerca on 2009-01-08 19:11:54 as ** along with 4 people Oyinlola zhlei jbelote hplatero
  • Structural basis for the activation of 20S proteasomes by 11S regulators.
    Nature, Vol. 408, No. 6808. (2 November 2000), pp. 115-120.
    by FG Whitby, EI Masters, L Kramer, JR Knowlton, Y Yao, CC Wang, CP Hill
    posted to tbrucei_proteasome tbrucei proteasome by cerca on 2009-01-08 06:39:46 as ** along with 2 people zhlei leemary4
  • Large-scale assignment of orthology: back to phylogenetics?
    Genome Biology, Vol. 9, No. 10. (2008)
    by Toni Gabaldon
    posted to paralogy orthology by cerca on 2009-01-03 03:45:49 as ** along with 9 people cgaugain GustavoLacerda treangen maximilianh samgj natstreet druvus APRegier barriot
  • Identification of conserved protein complexes based on a model of protein network evolution.
    Bioinformatics, Vol. 23, No. 2. (15 January 2007)
    by E Hirsh, R Sharan
    posted to interologs by cerca on 2008-12-21 23:16:15 as ** along with 2 people and 1 group grahamc iris_2001 ParkinsonLab_at_MaRS
  • Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs".
    Genome Res, Vol. 11, No. 12. (December 2001), pp. 2120-2126.
    by LR Matthews, P Vaglio, J Reboul, H Ge, BP Davis, J Garrels, S Vincent, M Vidal
    posted to ppiprediction low_and_high_conf_interactions interologs by cerca on 2008-12-21 23:04:22 as ** along with 5 people and 2 groups tharris lfriedl nuke2005 bluto cjeans C. elegans / WormBase kdl
  • Orientation of the 19S Regulator Relative to the 20S Core Proteasome: An Immunoelectron Microscopic Study
    Journal of Molecular Biology, Vol. 329, No. 1. (23 May 2003), pp. 9-14.
    by F Kopp
    posted to proteasome by cerca on 2008-12-18 04:32:18 as **
  • Proteasome function is dispensable under normal but not under heat shock conditions in Thermoplasma acidophilum
    FEBS Letters, Vol. 425, No. 1. (20 March 1998), pp. 87-90.
    by A Ruepp
    posted to no-tag by cerca on 2008-12-17 15:42:50 as **
  • Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
    Nature (22 March 2006)
    by Nevan J Krogan, Gerard Cagney, Haiyuan Yu, Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron P Tikuisis, Thanuja Punna, Josã© M Peregrã­n-Alvarez, Michael Shales, Xin Zhang, Michael Davey, Mark D Robinson, Alberto Paccanaro, James E Bray, Anthony Sheung, Bryan Beattie, Dawn P Richards, Veronica Canadien, Atanas Lalev, Frank Mena, Peter Wong, Andrei Starostine, Myra M Canete, James Vlasblom, Samuel Wu, Chris Orsi, Sean R Collins, Shamanta Chandran, Robin Haw, Jennifer J Rilstone, Kiran Gandi, Natalie J Thompson, Gabe Musso, Peter St Onge, Shaun Ghanny, Mandy HY Lam, Gareth Butland, Amin M Altaf-Ul, Shigehiko Kanaya, Ali Shilatifard, Erin O'Shea, Jonathan S Weissman, James C Ingles, Timothy R Hughes, John Parkinson, Mark Gerstein, Shoshana J Wodak, Andrew Emili, Jack F Greenblatt
    posted to ppi by cerca on 2008-12-15 19:44:18 as ** along with 23 people and 4 groups jiny Borelli lfriedl chad_davis balajis marcius tardigrade nirfriedman balabu j3xucite nickluscombe koller raiyar cjeans nicoleq Evangelia csaveanu frohike carlk hplatero chasmand mapplab ethkim kdl EBI-regulation BioinfoCIPF SGU-CIPF
  • Role and function of the 26S proteasome in proliferation and apoptosis.
    Laboratory investigation; a journal of technical methods and pathology, Vol. 82, No. 8. (August 2002), pp. 965-980.
    by C Naujokat, S Hoffmann
    posted to proteasome by cerca on 2008-12-14 23:29:18 as **
  • The proteasome: a macromolecular assembly designed for controlled proteolysis.
    Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Vol. 354, No. 1389. (29 September 1999), pp. 1501-1511.
    by P Zwickl, D Voges, W Baumeister
    posted to proteasome by cerca on 2008-12-14 23:24:30 as **
  • Ulysses - an application for the projection of molecular interactions across species.
    Genome biology, Vol. 6, No. 12. (2005)
    by D Kemmer, Y Huang, SP Shah, J Lim, J Brumm, MM Yuen, J Ling, T Xu, WW Wasserman, BF Ouellette
    posted to ppiprediction by cerca on 2008-12-12 19:57:15 as **
  • HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms.
    BMC Bioinformatics, Vol. 6 Suppl 4 (1 December 2005)
    by M Persico, A Ceol, C Gavrila, R Hoffmann, A Florio, G Cesareni
    posted to ppiprediction by cerca on 2008-12-12 04:26:46 as ** along with 2 people maryee mariap3636
  • cDNA Cloning and Characterization of a Human Proteasomal Modulator Subunit, p27 (PSMD9),
    Genomics, Vol. 50, No. 2. (01 June 1998), pp. 241-250.
    by T Watanabe
    posted to proteasome by cerca on 2008-12-11 04:19:29 as **
  • An Optimized Predictive Strategy for Interactome Mapping†
    Journal of Proteome Research, Vol. 7, No. 9. (2008), pp. 4089-4094.
    by Martin J Aryee, John Quackenbush
    posted to ppiprediction by cerca on 2008-12-09 17:24:25 as **
  • BioGRID: a general repository for interaction datasets.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by C Stark, BJ Breitkreutz, T Reguly, L Boucher, A Breitkreutz, M Tyers
    posted to ppi_databases by cerca on 2008-12-02 03:59:53 as ** along with 12 people csanford guhjy balajis koller nm lpfernandes Evangelia chasmand carlk dragonrez tmmurali dylanwalker
  • MINT: a Molecular INTeraction database
    FEBS Letters, Vol. 513, No. 1. (February 2002), pp. 135-140.
    by A Zanzoni
    posted to ppi_databases by cerca on 2008-12-02 03:32:33 as **
  • MINT: the Molecular INTeraction database
    Nucleic Acids Research, Vol. 35, No. Supplement 1. (January 2007), pp. D572-D574.
    by Chatr-Aryamontri, Andrew, Ceol, Arnaud, Palazzi, Luisa Montecchi, Nardelli, Giuliano, Schneider, Maria Victoria, Castagnoli, Luisa, Cesareni, Gianni
    posted to ppi_databases by cerca on 2008-12-02 03:30:29 as ** along with 1 person guhjy
  • The importance of stupidity in scientific research
    J Cell Sci, Vol. 121, No. 11. (1 June 2008), 1771.
    by Martin A Schwartz
    posted to opinions by cerca on 2008-11-26 13:15:46 as ** along with 8 people and 2 groups sriesenfeld aramata dullhunk arindrartow barry ibuch casutton jporternj McCammon structural_bioinformatics
  • Nature Protocols: Smart-pool-array protocol for a yeast two-hybrid array
    posted to y2h by cerca on 2008-11-25 13:41:40 as **
  • Yeast Two-Hybrid: State of the Art
    posted to y2h by cerca on 2008-11-25 13:38:49 as **
  • In vitro recombination cloning of entire cDNA libraries in Arabidopsis thaliana and its application to the yeast two-hybrid system
    Functional & Integrative Genomics, Vol. 5, No. 3. (17 July 2005), pp. 175-183.
    by Lukas Bürkle, Svenja Meyer, Hakan Dortay, Hans Lehrach, Alexander Heyl
    posted to y2h pfalciparum_tbrucei_host_parasite_interaction by cerca on 2008-11-24 02:16:42 as **
  • A modular network model of aging
    Mol Syst Biol, Vol. 3 (4 December 2007)
    by Huiling Xue, Bo Xian, Dong Dong, Kai Xia, Shanshan Zhu, Zhongnan Zhang, Lei Hou, Qingpeng Zhang, Yi Zhang, Jing-Dong J Han
    posted to ageing by cerca on 2008-11-21 12:56:17 as ** along with 11 people and 1 group carlfulp tharris tmmurali muraken grahamc cjeans zwang biehl mingzhi renatomilani dap5087 C. elegans / WormBase
  • Benchmarks for ageing studies
    Nature, Vol. 450, No. 7167. (07 November 2007), pp. 165-167.
    by Linda Partridge, David Gems
    posted to ageing by cerca on 2008-11-21 12:48:39 as **
  • A mechanism for asymmetric segregation of age during yeast budding
    Nature (27 July 2008)
    by Zhanna Shcheprova, Sandro Baldi, Stephanie B Frei, Gaston Gonnet, Yves Barral
    posted to ageing by cerca on 2008-11-21 12:44:32 as **
  • Is mammalian aging genetically controlled?
    Biogerontology, Vol. 4, No. 2. (21 March 2003), pp. 119-120.
    by João de Magalhães
    posted to ageing by cerca on 2008-11-20 06:08:28 as **
  • Yeast mother cell-specific ageing, genetic (in)stability, and the somatic mutation theory of ageing.
    Nucleic acids research, Vol. 35, No. 22. (2007), pp. 7514-7526.
    by P Laun, CV Bruschi, JR Dickinson, M Rinnerthaler, G Heeren, R Schwimbersky, R Rid, M Breitenbach
    posted to ageing by cerca on 2008-11-20 05:31:58 as ** along with 1 person hplatero
  • The Pfam protein families database.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 263-266.
    by A Bateman, E Birney, R Durbin, SR Eddy, KL Howe, EL Sonnhammer
    posted to protein_families_domains by cerca on 2008-11-19 04:57:51 as ** along with 1 person cjeans
  • The Pfam protein families database.
    Nucleic Acids Res, Vol. 32 Database issue (1 January 2004)
    by A Bateman, L Coin, R Durbin, RD Finn, V Hollich, S Griffiths-Jones, A Khanna, M Marshall, S Moxon, EL Sonnhammer, DJ Studholme, C Yeats, SR Eddy
    posted to protein_families_domains by cerca on 2008-11-19 04:56:35 as ** along with 6 people LeightonP ziquje chad_davis cjeans wenhan gulkur
  • Pfam: clans, web tools and services.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by RD Finn, J Mistry, B Schuster-Böckler, S Griffiths-Jones, V Hollich, T Lassmann, S Moxon, M Marshall, A Khanna, R Durbin, SR Eddy, EL Sonnhammer, A Bateman
    posted to protein_families_domains by cerca on 2008-11-19 04:54:58 as ** along with 11 people gbart dullhunk massivemayhem cjeans siebertm lpfernandes pablomendes antonkratz natstreet Lombardo_7 phoenixzxl
  • Deducing topology of protein-protein interaction networks from experimentally measured sub-networks
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Ling Yang, Thomas Vondriska, Zhangang Han, Robb Maclellan, James Weiss, Zhilin Qu
    posted to analysisy2h by cerca on 2008-11-18 21:16:53 as ** along with 5 people satre dolchan renatomilani brianb neils
  • Design and application of a cytokine-receptor-based interaction trap
    Nat Cell Biol, Vol. 3, No. 12. (December 2001), pp. 1114-1119.
    by Sven Eyckerman, Annick Verhee, Der, Irma Lemmens, Xaveer V Ostade, Joel Vandekerckhove, Jan Tavernier
    posted to ppi_methods by cerca on 2008-11-18 15:07:51 as **
  • PIPs: human protein-protein interaction prediction database.
    Nucleic acids research (6 November 2008)
    by Mark D D McDowall, Michelle S S Scott, Geoffrey J J Barton
    posted to ppiprediction by cerca on 2008-11-18 04:08:42 as ** along with 5 people guhjy kgutwin renatomilani higueruelo grahamc
  • SPIDer: Saccharomyces protein-protein interaction database.
    BMC bioinformatics, Vol. 7 Suppl 5 (2006)
    by X Wu, L Zhu, J Guo, C Fu, H Zhou, D Dong, Z Li, DY Zhang, K Lin
    posted to ppiprediction by cerca on 2008-11-18 04:03:13 as **
  • Computational analysis of human protein interaction networks.
    Proteomics, Vol. 7, No. 15. (August 2007), pp. 2541-2552.
    by F Ramírez, A Schlicker, Y Assenov, T Lengauer, M Albrecht
    posted to ppiprediction by cerca on 2008-11-18 03:59:27 as ** along with 6 people aelef guhjy balicea grahamc paolomarcatili carlk
  • Probabilistic prediction and ranking of human protein-protein interactions
    BMC Bioinformatics, Vol. 8 (05 July 2007), 239.
    by Michelle S Scott, Geoffrey J Barton
    posted to ppiprediction by cerca on 2008-11-18 03:58:24 as ** along with 4 people and 1 group wnpx grahamc zwang mingzhi ParkinsonLab_at_MaRS
  • Online Predicted Human Interaction Database
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 2076-2082.
    by Kevin R Brown, Igor Jurisica
    posted to ppiprediction by cerca on 2008-11-18 03:54:52 as ** along with 1 person diamantis
  • A map of the interactome network of the metazoan C. elegans.
    Science, Vol. 303, No. 5657. (23 January 2004), pp. 540-543.
    by S Li, CM Armstrong, N Bertin, H Ge, S Milstein, M Boxem, PO Vidalain, JD Han, A Chesneau, T Hao, DS Goldberg, N Li, M Martinez, JF Rual, P Lamesch, L Xu, M Tewari, SL Wong, LV Zhang, GF Berriz, L Jacotot, P Vaglio, J Reboul, T Hirozane-Kishikawa, Q Li, HW Gabel, A Elewa, B Baumgartner, DJ Rose, H Yu, S Bosak, R Sequerra, A Fraser, SE Mango, WM Saxton, S Strome, S Van Den Heuvel, F Piano, J Vandenhaute, C Sardet, M Gerstein, L Doucette-Stamm, KC Gunsalus, JW Harper, ME Cusick, FP Roth, DE Hill, M Vidal
    posted to low_and_high_conf_interactions by cerca on 2008-11-07 04:48:27 as ** along with 9 people and 2 groups tharris shivaram lfriedl nuke2005 lyongu sesejun Chue carlk ksiek C. elegans / WormBase kdl
  • ag
    posted to ageing by cerca on 2008-11-02 09:49:54 as **
  • Long lifespan in worms with long telomeric DNA
    Nat Genet, Vol. 36, No. 6. (June 2004), pp. 607-611.
    by Kyu S Joeng, Eun J Song, Kong-Joo Lee, Junho Lee
    posted to ageing by cerca on 2008-11-02 09:48:36 as **
  • Telomeres and telomerase: a modern fountain of youth?
    Rejuvenation research, Vol. 7, No. 2. (2004), pp. 126-133.
    by JP de Magalhães, O Toussaint
    posted to ageing by cerca on 2008-11-02 09:47:59 as **
  • trt-1 Is the Caenorhabditis elegans Catalytic Subunit of Telomerase
    PLoS Genet, Vol. 2, No. 2. (10 February 2006), e18.
    by Bettina Meier, Iuval Clejan, Yan Liu, Mia Lowden, Anton Gartner, Jonathan Hodgkin, Shawn Ahmed
    posted to ageing by cerca on 2008-11-02 09:45:40 as **
  • How bioinformatics can help reverse engineer human aging.
    Ageing research reviews, Vol. 3, No. 2. (April 2004), pp. 125-141.
    by JP de Magalhães, O Toussaint
    posted to ageing by cerca on 2008-11-02 09:44:45 as **
  • Effect of sampling on topology predictions of protein-protein interaction networks
    Nature Biotechnology, Vol. 23, No. 7. (07 July 2005), pp. 839-844.
    by Jing-Dong J Han, Denis Dupuy, Nicolas Bertin, Michael E Cusick, Marc Vidal
    posted to analysisy2h by cerca on 2008-10-30 15:23:53 as ** along with 14 people csanford diamantis snuppepuppan kuhn rabbat gurkanbebek koller eukfn mikaelhuss grahamc cjeans iris_2001 paolomarcatili carlk
  • Local modeling of global interactome networks
    Bioinformatics, Vol. 21, No. 17. (1 September 2005), pp. 3548-3557.
    by Denise Scholtens, Marc Vidal, Robert Gentleman
    posted to analysisy2h by cerca on 2008-10-30 15:23:43 as ** along with 1 person nirfriedman
  • High-Quality Binary Protein Interaction Map of the Yeast Interactome Network
    Science (21 August 2008), 1158684.
    by Haiyuan Yu, Pascal Braun, Muhammed A Yildirim, Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amelie Dricot, Alexei Vazquez, Ryan R Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E Hudson, Juyong Park, Xiaofeng Xin, Michael E Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P Roth, Albert-Laszlo Barabasi, Jan Tavernier, David E Hill, Marc Vidal
    posted to analysisy2h by cerca on 2008-10-30 14:27:14 as ** along with 18 people and 1 group kintoki jbhiatt elenaz jfr ocs ptrobajo carlk zwang gracio reyez mdperry dullhunk Petersarkies grahamc yeastyboy guhjy maralena neils BenosLab
  • Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases.
    Trends Biochem Sci, Vol. 23, No. 11. (November 1998), pp. 444-447.
    by SF Altschul, EV Koonin
    posted to bioinfo_classic by cerca on 2008-10-02 18:59:53 as ** along with 2 people chad_davis newton1234
  • Glycolipid anchoring of plasma membrane proteins.
    Annual review of cell biology, Vol. 6 (1990), pp. 1-39.
    by GA Cross
    posted to gpi by cerca on 2008-10-02 15:24:12 as **
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