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cisevol's library [332 articles]

Recent papers added to cisevol's library.
  • Transposition of cloned P elements into Drosophila germ line chromosomes.
    Science (New York, N.Y.), Vol. 218, No. 4570. (22 October 1982), pp. 341-347.
    by AC Spradling, GM Rubin
    posted to transposon transformation p-element by cisevol on 2008-08-23 11:36:00 as ** along with 1 group Drosophila-Genetics-Genomics-2008
  • Genetic transformation of Drosophila with transposable element vectors.
    Science (New York, N.Y.), Vol. 218, No. 4570. (22 October 1982), pp. 348-353.
    by GM Rubin, AC Spradling
    posted to transformation p-element by cisevol on 2008-08-23 11:32:54 as ** along with 1 group Drosophila-Genetics-Genomics-2008
  • A system for mapping DNA sequences in the chromosomes of Drosophila melanogaster.
    Cell, Vol. 3, No. 4. (December 1974), pp. 315-325.
    by PC Wensink, DJ Finnegan, JE Donelson, DS Hogness
    posted to repetitive_dna molecular_biology by cisevol on 2008-08-23 11:22:34 as ** along with 1 group Drosophila-Genetics-Genomics-2008
  • LOCALIZATION OF DNA COMPLEMENTARY TO RIBOSOMAL RNA IN THE NUCLEOLUS ORGANIZER REGION OF DROSOPHILA MELANOGASTER.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 53 (April 1965), pp. 737-745.
    by FM RITOSSA, S SPIEGELMAN
    posted to ribosomal_dna molecular_biology by cisevol on 2008-08-23 11:16:40 as ** along with 1 group Drosophila-Genetics-Genomics-2008
  • Chromosome studies in the Diptera. I. A preliminary survey of five different types of chromosome groups in the genus Drosophila
    Journal of Experimental Zoology, Vol. 17, No. 1. (1914), pp. 45-59.
    by Charles W Metz
    posted to cytogenetics comparative_genomics by cisevol on 2008-08-23 09:17:54 as ** along with 1 group Drosophila-Genetics-Genomics-2008
  • A NEW METHOD FOR THE STUDY OF CHROMOSOME REARRANGEMENTS AND THE PLOTTING OF CHROMOSOME MAPS.
    Science (New York, N.Y.), Vol. 78, No. 2034. (22 December 1933), pp. 585-586.
    by T S S Painter
    posted to polytene genetic_mapping by cisevol on 2008-08-23 08:12:16 as ** along with 1 group Drosophila-Genetics-Genomics-2008
  • A CYTOLOGICAL MAP OF THE X-CHROMOSOME OF DROSOPHILA MELANOGASTER.
    Science (New York, N.Y.), Vol. 73, No. 1902. (12 June 1931), pp. 647-648.
    by T S S Painter
    posted to polytene by cisevol on 2008-08-23 04:05:26 as **
  • The Relations of Inversions in the X Chromosome of Drosophila Melanogaster to Crossing over and Disjunction.
    Genetics, Vol. 21, No. 5. (September 1936), pp. 554-604.
    by AH Sturtevant, GW Beadle
    posted to inversion by cisevol on 2008-08-23 03:51:38 as ** along with 1 group Drosophila-Genetics-Genomics-2008
  • ARTIFICIAL TRANSMUTATION OF THE GENE.
    Science (New York, N.Y.), Vol. 66, No. 1699. (22 July 1927), pp. 84-87.
    by H J J Muller
    posted to x_ray mutation by cisevol on 2008-08-22 13:52:00 as ** along with 1 group Drosophila-Genetics-Genomics-2008
  • Drosophila melanogaster: a case study of a model genomic sequence and its consequences.
    Genome Res, Vol. 15, No. 12. (December 2005), pp. 1661-1667.
    by M Ashburner, CM Bergman
    posted to review genome_sequence annotation by cisevol on 2008-08-22 13:47:11 as ** along with 3 people and 3 groups indigoviolet emilyhare penka Drosophila-Genetics-Genomics-2008 EisenLab Nie
  • The ribosomal protein genes and Minute loci of Drosophila melanogaster
    Genome Biology, Vol. 8, No. 10. (2007)
    by Steven Marygold, John Roote, Gunter Reuter, Andrew Lambertsson, Michael Ashburner, Gillian Millburn, Paul Harrison, Zhan Yu, Naoya Kenmochi, Thomas Kaufman, Sally Leevers, Kevin Cook
    posted to minute haploinsufficient by cisevol on 2008-08-22 10:27:57 as ** along with 1 group Drosophila-Genetics-Genomics-2008
  • The Production of Mutations by X-Rays.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 14, No. 9. (September 1928), pp. 714-726.
    by HJ Muller
    posted to radiation mutation by cisevol on 2008-08-21 14:58:54 as **
  • Non-Disjunction as Proof of the Chromosome Theory of Heredity (Concluded).
    Genetics, Vol. 1, No. 2. (March 1916), pp. 107-163.
    by CB Bridges
    posted to nondisjunction chromsome_mechanics by cisevol on 2008-08-21 14:48:31 as ** along with 1 group Drosophila-Genetics-Genomics-2008
  • Non-Disjunction as Proof of the Chromosome Theory of Heredity.
    Genetics, Vol. 1, No. 1. (January 1916), pp. 1-52.
    by CB Bridges
    posted to nondisjunction chromsome_mechanics by cisevol on 2008-08-21 14:47:50 as ** along with 1 group Drosophila-Genetics-Genomics-2008
  • INBREEDING, CROSS-BREEDING AND STERILITY IN DROSOPHILA.
    Science (New York, N.Y.), Vol. 23, No. 578. (26 January 1906)
    by W E E Castle
    posted to inbreeding fecundity by cisevol on 2008-08-21 14:44:17 as ** along with 1 group Drosophila-Genetics-Genomics-2008
  • The linear arrangement of six sex-linked factors in Drosophila, as shown by their mode of association
    Journal of Experimental Zoology, Vol. 14, No. 1. (1913), pp. 43-59.
    by AH Sturtevant
    posted to sex_linkage linkage genetic_mapping by cisevol on 2008-08-21 14:41:20 as ** along with 1 group Drosophila-Genetics-Genomics-2008
  • A Case of Rearrangement of Genes in Drosophila.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 7, No. 8. (August 1921), pp. 235-237.
    by AH Sturtevant
    posted to inversion by cisevol on 2008-08-21 13:58:40 as ** along with 1 group Drosophila-Genetics-Genomics-2008
  • Inversions in the Third Chromosome of Wild Races of Drosophila Pseudoobscura, and Their Use in the Study of the History of the Species.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 22, No. 7. (July 1936), pp. 448-450.
    by AH Sturtevant, T Dobzhansky
    posted to polytene phylogenetics inversion by cisevol on 2008-08-21 13:56:56 as ** along with 1 group Drosophila-Genetics-Genomics-2008
  • On the Subdivision of the Genus Drosophila.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 25, No. 3. (March 1939), pp. 137-141.
    by AH Sturtevant
    posted to taxonomy by cisevol on 2008-08-21 13:54:50 as ** along with 1 group Drosophila-Genetics-Genomics-2008
  • The Homologies of the Chromosome Elements in the Genus Drosophila.
    Genetics, Vol. 26, No. 5. (September 1941), pp. 517-541.
    by AH Sturtevant, E Novitski
    posted to mullers_elements comparative_genomics by cisevol on 2008-08-21 13:53:38 as ** along with 1 group Drosophila-Genetics-Genomics-2008
  • SEX LIMITED INHERITANCE IN DROSOPHILA.
    Science (New York, N.Y.), Vol. 32, No. 812. (22 July 1910), pp. 120-122.
    by T H H Morgan
    posted to white sex_linkage by cisevol on 2008-08-21 13:40:05 as ** along with 1 group Drosophila-Genetics-Genomics-2008
  • Selective Constraints in Experimentally Defined Primate Regulatory Regions
    PLoS Genet, Vol. 4, No. 8. (2008), e1000157.
    by Daniel J Gaffney, Ran Blekhman, Jacek Majewski
    posted to mammals cis-regulatory by cisevol on 2008-08-19 12:05:55 as ** along with 7 people and 2 groups alhufton maximilianh caseybrown pradiptaray aprasad bpcusack djkt cis-regulatory-evolution BergmanLab
  • Genomic analysis of the relationship between gene expression variation and DNA polymorphism in Drosophila simulans
    Genome Biology, Vol. 9, No. 8. (2008)
    by Mara Lawniczak, Alisha Holloway, David Begun, Corbin Jones
    posted to variation microarray flies cis-regulatory by cisevol on 2008-08-17 23:46:39 as ** along with 3 people and 1 group djkt caseybrown APRegier cis-regulatory-evolution
  • Population genomics for fruitflies.
    Nature, Vol. 453, No. 7199. (26 June 2008), pp. 1154-1155.
    by H Ledford
    posted to variation genome_sequence drosophila by cisevol on 2008-08-14 13:33:42 as ** along with 2 groups Drosophila-Genetics-Genomics-2008 BergmanLab
  • Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
    Nature, Vol. 450, No. 7167., pp. 219-232.
    by Alexander Stark, Michael F Lin, Pouya Kheradpour, Jakob S Pedersen, Leopold Parts, Joseph W Carlson, Madeline A Crosby, Matthew D Rasmussen, Sushmita Roy, Ameya N Deoras, Graham J Ruby, Julius Brennecke, Harvard F Curators, Berkeley, Emily Hodges, Angie S Hinrichs, Anat Caspi, Benedict Paten, Seung-Won Park, Mira V Han, Morgan L Maeder, Benjamin J Polansky, Bryanne E Robson, Stein Aerts, Jacques van Helden, Bassem Hassan, Donald G Gilbert, Deborah A Eastman, Michael Rice, Michael Weir, Matthew W Hahn, Yongkyu Park, Colin N Dewey, Lior Pachter, James W Kent, David Haussler, Eric C Lai, David P Bartel, Gregory J Hannon, Thomas C Kaufman, Michael B Eisen, Andrew G Clark, Douglas Smith, Susan E Celniker, William M Gelbart, Manolis Kellis
    posted to drosophila annotation by cisevol on 2008-08-12 13:53:10 as ** along with 14 people and 3 groups shuzhens PetrovLab operon tmmurali djkt timflutre stajich lp2 cabbagezs nklee hpaces roys caseybrown gjuggler Drosophila-Genetics-Genomics-2008 csb_journal_club_public Berkeley Mycology
  • Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.
    Genome biology, Vol. 3, No. 12. (2002)
    by S Misra, MA Crosby, CJ Mungall, BB Matthews, KS Campbell, P Hradecky, Y Huang, JS Kaminker, GH Millburn, SE Prochnik, CD Smith, JL Tupy, EJ Whitfied, L Bayraktaroglu, BP Berman, BR Bettencourt, SE Celniker, AD de Grey, RA Drysdale, NL Harris, J Richter, S Russo, AJ Schroeder, SQ Shu, M Stapleton, C Yamada, M Ashburner, WM Gelbart, GM Rubin, SE Lewis
    posted to genome_sequence drosophila annotation by cisevol on 2008-08-12 13:49:12 as ** along with 1 group Drosophila-Genetics-Genomics-2008
  • A whole-genome assembly of Drosophila.
    Science, Vol. 287, No. 5461. (24 March 2000), pp. 2196-2204.
    by EW Myers, GG Sutton, AL Delcher, IM Dew, DP Fasulo, MJ Flanigan, SA Kravitz, CM Mobarry, KH Reinert, KA Remington, EL Anson, RA Bolanos, HH Chou, CM Jordan, AL Halpern, S Lonardi, EM Beasley, RC Brandon, L Chen, PJ Dunn, Z Lai, Y Liang, DR Nusskern, M Zhan, Q Zhang, X Zheng, GM Rubin, MD Adams, JC Venter
    posted to shotgun genome_sequence drosophila assembly by cisevol on 2008-08-12 13:48:24 as ** along with 5 people and 3 groups bluto azazello wenhan tpreeprem yoanjacquemin Drosophila-Genetics-Genomics-2008 MBLAB gatech-compgenomics
  • Evolution of genes and genomes on the Drosophila phylogeny
    Nature, Vol. 450, No. 7167. (November 2007), pp. 203-218.
    posted to genome_sequence drosophila by cisevol on 2008-08-12 13:47:06 as ** along with 19 people and 6 groups hdopazo balicea isimpson CharlesM PetrovLab operon tmmurali indigoviolet djkt timflutre stajich zwang Garamonfok lp2 hpaces caseybrown emptyhb urgi noor Drosophila-Genetics-Genomics-2008 BergmanLab Bioinformatics EisenLab csb_journal_club_public Berkeley Mycology
  • Heterochromatic sequences in a Drosophila whole-genome shotgun assembly.
    Genome biology, Vol. 3, No. 12. (2002)
    by RA Hoskins, CD Smith, JW Carlson, AB Carvalho, A Halpern, JS Kaminker, C Kennedy, CJ Mungall, BA Sullivan, GG Sutton, JC Yasuhara, BT Wakimoto, EW Myers, SE Celniker, GM Rubin, GH Karpen
    posted to heterochromatin genome_sequence drosophila by cisevol on 2008-08-12 13:42:44 as ** along with 1 group Drosophila-Genetics-Genomics-2008
  • A novel mode of enhancer evolution: The Tal1 stem cell enhancer recruited a MIR element to specifically boost its activity.
    Genome research (7 August 2008)
    by Aileen M M Smith, Maria-Jose J Sanchez, George A A Follows, Sarah Kinston, Ian J J Donaldson, Anthony R R Green, Berthold Göttgens
    posted to transposon mammals cis-regulatory by cisevol on 2008-08-11 19:50:59 as ** along with 2 groups cis-regulatory-evolution BergmanLab
  • Gene expression variation in African and European populations of Drosophila melanogaster
    Genome Biology, Vol. 9 (21 January 2008), R12.
    by Stephan Hutter, Sarah S Saminadin-Peter, Wolfgang Stephan, John Parsch
    posted to variation flies expression by cisevol on 2008-07-23 13:26:05 as ** along with 2 people and 1 group caseybrown sb_journal_club cis-regulatory-evolution
  • The yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple model.
    EMBO reports, Vol. 5, No. 3. (March 2004), pp. 280-284.
    by V van Noort, B Snel, MA Huynen
    posted to fungi expression duplication by cisevol on 2008-07-23 09:01:02 as ** along with 1 group cis-regulatory-evolution
  • Gene co-regulation is highly conserved in the evolution of eukaryotes and prokaryotes.
    Nucleic Acids Res, Vol. 32, No. 16. (2004), pp. 4725-4731.
    by B Snel, V van Noort, MA Huynen
    posted to worms fungi expression duplication bacteria by cisevol on 2008-07-23 09:00:05 as ** along with 1 person and 1 group bjorns cis-regulatory-evolution
  • Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts
    Nature, Vol. 440, No. 7082., pp. 341-345.
    by Devin R Scannell, Kevin P Byrne, Jonathan L Gordon, Simon Wong, Kenneth H Wolfe
    posted to fungi duplication by cisevol on 2008-07-22 20:22:48 as ** along with 5 people and 2 groups RMGraze dpollard cmm echinotrix souravc EisenLab FAB-lab
  • Functional Analysis of Gene Duplications in Saccharomyces cerevisiae
    Genetics, Vol. 175, No. 2. (1 February 2007), pp. 933-943.
    by Yuanfang Guan, Maitreya J Dunham, Olga G Troyanskaya
    posted to fungi duplication cis-regulatory by cisevol on 2008-07-22 20:17:40 as ** along with 3 people and 1 group carlk TaqSys csaveanu cis-regulatory-evolution
  • Heterosis and the Evolution of Duplications
    The American Naturalist, Vol. 103, No. 932. (1969), pp. 407-432.
    by Janice B Spofford
    posted to duplication by cisevol on 2008-07-22 20:11:39 as **
  • Evolution of genetic redundancy.
    Nature, Vol. 388, No. 6638. (10 July 1997), pp. 167-171.
    by MA Nowak, MC Boerlijst, J Cooke, JM Smith
    posted to duplication by cisevol on 2008-07-22 20:07:04 as **
  • Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement
    Genome Res. (14 July 2008), gr.080119.108.
    by Andrew L Hufton, Detlef Groth, Martin Vingron, Hans Lehrach, Albert J Poustka, Georgia Panopoulou
    posted to vertebrate rearrangement by cisevol on 2008-07-17 20:29:46 as ** along with 2 people and 1 group alhufton neils BergmanLab
  • Integration of Horizontally Transferred Genes into Regulatory Interaction Networks Takes Many Million Years
    Mol Biol Evol (24 December 2007), msm283.
    by Martin J Lercher, Csaba Pal
    posted to horizontal_transfer cis-regulatory bacteria by cisevol on 2008-07-12 06:35:01 as ** along with 4 people and 1 group cambray marcio dquest cjeans cis-regulatory-evolution
  • Retroviral promoters in the human genome
    Bioinformatics, Vol. 24, No. 14. (15 July 2008), pp. 1563-1567.
    by Andrew B Conley, Jittima Piriyapongsa, King I Jordan
    posted to transposon promoter mammals by cisevol on 2008-07-10 13:36:29 as ** along with 2 people and 2 groups maximilianh idonaldson cis-regulatory-evolution BergmanLab
  • Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster
    Genome Res. (26 June 2008), gr.077131.108.
    by Alisha Holloway, David Begun, Adam Siepel, Katherine Pollard
    posted to noncoding flies by cisevol on 2008-07-10 13:36:09 as ** along with 2 people and 2 groups bpcusack maximilianh cis-regulatory-evolution BergmanLab
  • A-to-I RNA editing alters less-conserved residues of highly conserved coding regions: Implications for dual functions in evolution.
    RNA (New York, N.Y.) (20 June 2008)
    by Yun Yang, Jianning Lv, Bin Gui, Heng Yin, Xiaojie Wu, Yaozhou Zhang, Yongfeng Jin
    posted to rna_editing by cisevol on 2008-07-03 15:30:09 as ** along with 1 group BergmanLab
  • Transgenesis upgrades for Drosophila melanogaster
    Development, Vol. 134, No. 20. (15 October 2007), pp. 3571-3584.
    by Koen J Venken, Hugo J Bellen
    posted to transposon drosophila by cisevol on 2008-07-03 13:58:43 as ** along with 1 person and 1 group emmahe BergmanLab
  • Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106.
    by Emily E Hare, Brant K Peterson, Venky N Iyer, Rudolf Meier, Michael B Eisen
    posted to flies cis-regulatory by cisevol on 2008-06-30 21:50:06 as ** along with 5 people and 2 groups emptyhb pradiptaray caseybrown stajich djkt cis-regulatory-evolution Berkeley Mycology
  • The words of the regulatory code are arranged in a variable manner in highly conserved enhancers.
    Developmental biology (4 April 2008)
    by Sepand Rastegar, Isabell Hess, Thomas Dickmeis, Jean Christophe C Nicod, Raymond Ertzer, Yavor Hadzhiev, Wolf-Gerolf G Thies, Gerd Scherer, Uwe Strähle
    posted to vertebrate cis-regulatory by cisevol on 2008-06-19 22:33:02 as ** along with 2 people and 1 group brant maximilianh cis-regulatory-evolution
  • Precise detection of rearrangement breakpoints in mammalian chromosomes
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Claire Lemaitre, Eric Tannier, Christian Gautier, Marie F Sagot
    posted to rearrangement breakpoints by cisevol on 2008-06-19 10:56:24 as ** along with 3 people and 1 group nuin timflutre Neeperando BergmanLab
  • Evolutionary changes in gene regulation from a comparative analysis of multiple Drosophila species.
    Genome informatics. International Conference on Genome Informatics, Vol. 18 (2007), pp. 12-21.
    by L Hu, D Segrè, TF Smith
    posted to rearrangement flies cis-regulatory by cisevol on 2008-06-12 21:57:48 as ** along with 1 person and 1 group pradiptaray cis-regulatory-evolution
  • CSMET: Comparative Genomic Motif Detection via Multi-Resolution Phylogenetic Shadowing
    PLoS Comput Biol, Vol. 4, No. 6. (6 June 2008), e1000090.
    by Pradipta Ray, Suyash Shringarpure, Mladen Kolar, Eric P Xing
    posted to model flies cis-regulatory by cisevol on 2008-06-07 21:39:11 as ** along with 3 people and 1 group Ema Stew djkt cis-regulatory-evolution
  • Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA
    BMC Genomics, Vol. 9 (17 May 2008), 226.
    by Nalini Polavarapu, Leonardo Marino-Ramirez, David Landsman, John F Mcdonald, King I Jordan
    posted to transposon mammals cis-regulatory by cisevol on 2008-05-29 22:08:57 as ** along with 2 people and 2 groups bryankr pradiptaray cis-regulatory-evolution BergmanLab
  • Promoter elements associated with RNA Pol II stalling in the Drosophila embryo
    Proceedings of the National Academy of Sciences (27 May 2008), 0802406105.
    by David A Hendrix, Joung-Woo Hong, Julia Zeitlinger, Daniel S Rokhsar, Michael S Levine
    posted to promoter drosophila by cisevol on 2008-05-29 21:08:32 as ** along with 1 person and 1 group oelemento BergmanLab
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