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cisevol's bacteria [18 articles]

Recent papers added to cisevol's library classified by the tag bacteria. You can also see everyone's bacteria.
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  • Gene co-regulation is highly conserved in the evolution of eukaryotes and prokaryotes.
    Nucleic Acids Res, Vol. 32, No. 16. (2004), pp. 4725-4731.
    by B Snel, V van Noort, MA Huynen
    posted to bacteria duplication expression fungi worms by cisevol on 2008-07-23 09:00:05 as ** along with 1 person and 1 group bjorns cis-regulatory-evolution
  • Integration of Horizontally Transferred Genes into Regulatory Interaction Networks Takes Many Million Years
    Mol Biol Evol (24 December 2007), msm283.
    by Martin J Lercher, Csaba Pal
    posted to bacteria cis-regulatory horizontal_transfer by cisevol on 2008-07-12 06:35:01 as ** along with 4 people and 1 group dquest cjeans marcio cambray cis-regulatory-evolution
  • Co-evolution of transcription factors and their targets depends on mode of regulation
    Genome Biology, Vol. 7 (19 July 2006), R62.
    by Ruth Hershberg, Hanah Margalit
    posted to bacteria cis-regulatory transcription_factor by cisevol on 2008-05-26 11:18:21 as ** along with 4 people and 2 groups indigoviolet dpollard cjeans PetrovLab EisenLab cis-regulatory-evolution
  • Expected Gene Order Distances and Model Selection in Bacteria.
    Bioinformatics (Oxford, England) (1 April 2008)
    by Daniel Dalevi, Niklas Eriksen
    posted to bacteria gene_order by cisevol on 2008-05-19 19:23:21 as ** along with 3 people and 1 group maximilianh Ema sharpton BergmanLab
  • The Cost of Expression of Escherichia coli lac Operon Proteins Is in the Process, Not in the Products.
    Genetics, Vol. 178, No. 3. (March 2008), pp. 1653-1660.
    by DM Stoebel, AM Dean, DE Dykhuizen
    posted to bacteria cost expression by cisevol on 2008-04-23 19:50:24 as ** along with 1 group BergmanLab
  • [Reconstruction of ancestral regulatory signals along a transcription factor tree]
    Molekuliarnaia biologiia, Vol. 41, No. 5. (t 2007), pp. 918-925.
    by KIu Gorbunov, VA Liubetskiĭĭ
    posted to bacteria cis-regulatory by cisevol on 2008-04-06 08:00:36 as ** along with 1 person and 1 group pradiptaray cis-regulatory-evolution
  • Impact of Transcription Units rearrangement on the evolution of the regulatory network of gamma-proteobacteria
    BMC Genomics, Vol. 9 (17 March 2008), 128.
    by Abel, Evelyn G Gonzalez, Vladimir E Angarica, Ana, Julio Collado-Vides
    posted to bacteria cis-regulatory by cisevol on 2008-03-20 18:15:11 as ** along with 1 group cis-regulatory-evolution
  • The origin of a novel gene through overprinting in Escherichia coli
    BMC Evolutionary Biology, Vol. 8, No. 1. (2008)
    by Luis Delaye, Alexander Deluna, Antonio Lazcano, Arturo Becerra
    posted to bacteria overlapping_gene by cisevol on 2008-01-28 18:27:22 as ** along with 1 group BergmanLab
  • Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution
    BMC Bioinformatics, Vol. 9 (23 January 2008), 37.
    by Rekin's Janky, Jacques van Helden
    posted to bacteria cis-regulatory model by cisevol on 2008-01-28 09:40:49 as ** along with 1 person and 1 group xili03 cis-regulatory-evolution
  • The evolution of DNA regulatory regions for proteo-gamma bacteria by interspecies comparisons.
    Genome Res, Vol. 12, No. 2. (February 2002), pp. 298-308.
    by N Rajewsky, ND Socci, M Zapotocky, ED Siggia
    posted to bacteria cis-regulatory by cisevol on 2007-10-16 22:56:09 as ** along with 1 person and 1 group wenhan cis-regulatory-evolution
  • Evolutionary population genetics of promoters: Predicting binding sites and functional phylogenies.
    Proc Natl Acad Sci U S A, Vol. 102, No. 44. (1 November 2005), pp. 15936-15941.
    by V Mustonen, M Lässig
    posted to bacteria cis-regulatory model by cisevol on 2007-10-16 22:55:11 as ** along with 4 people and 2 groups kaarsinogen dpollard lusk emptyhb EisenLab cis-regulatory-evolution
  • Reconstruction of the evolutionary history of the LexA-binding sequence.
    Microbiology, Vol. 150, No. Pt 11. (November 2004), pp. 3783-3795.
    by G Mazón, I Erill, S Campoy, P Cortés, E Forano, J Barbé
    posted to bacteria cis-regulatory by cisevol on 2007-10-16 22:53:08 as ** along with 1 group cis-regulatory-evolution
  • Conservation of the binding site for the arginine repressor in all bacterial lineages.
    Genome Biol, Vol. 2, No. 4. (2001)
    by KS Makarova, AA Mironov, MS Gelfand
    posted to bacteria cis-regulatory by cisevol on 2007-10-16 22:52:13 as ** along with 1 group cis-regulatory-evolution
  • Evolution of transcription factor DNA binding sites.
    Gene, Vol. 347, No. 2. (14 March 2005), pp. 255-263.
    by EA Kotelnikova, VJ Makeev, MS Gelfand
    posted to bacteria cis-regulatory model by cisevol on 2007-10-16 22:44:07 as ** along with 4 people and 1 group balajis gpalidwor nklee yevishere cis-regulatory-evolution
  • Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Positional conservation of clusters of overlapping promoter-like sequences in enterobacterial genomes.
    Mol Biol Evol, Vol. 23, No. 5. (May 2006), pp. 997-1010.
    by AM Huerta, J Collado-Vides, MP Francino,
    posted to bacteria cis-regulatory by cisevol on 2007-10-16 22:38:23 as ** along with 1 group cis-regulatory-evolution
  • The effects of selection against spurious transcription factor binding sites.
    Mol Biol Evol, Vol. 20, No. 6. (June 2003), pp. 901-906.
    by MW Hahn, JE Stajich, GA Wray
    posted to bacteria cis-regulatory model by cisevol on 2007-10-16 22:36:17 as ** along with 1 person and 1 group emptyhb cis-regulatory-evolution
  • Evolutionary comparisons suggest many novel cAMP response protein binding sites in Escherichia coli.
    Proc Natl Acad Sci U S A, Vol. 101, No. 8. (24 February 2004), pp. 2404-2409.
    by CT Brown, CG Callan
    posted to bacteria cis-regulatory model by cisevol on 2007-10-16 22:09:36 as ** along with 1 group cis-regulatory-evolution
  • Adaptive evolution of transcription factor binding sites.
    BMC Evol Biol, Vol. 4, No. 1. (28 October 2004)
    by J Berg, S Willmann, M Lässig
    posted to bacteria cis-regulatory model by cisevol on 2007-10-16 22:05:40 as ** along with 4 people and 1 group bmajoros kaarsinogen jjray discreteonyxorb cis-regulatory-evolution
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