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jamselem's library [14 articles]

Recent papers added to jamselem's library.
  • GMODWeb: a web framework for the generic model organism database
    Genome Biology, Vol. 9, No. 6. (2008)
    by Brian O'Connor, Allen Day, Scott Cain, Olivier Arnaiz, Linda Sperling, Lincoln Stein
    posted to bd annotation by jamselem on 2008-07-03 13:35:35 as ** along with 3 people dullhunk neils tharris
  • Calling on a million minds for community annotation in WikiProteins
    Genome Biology, Vol. 9, No. 5. (2008)
    by Barend Mons, Michael Ashburner, Christine Chichester, Erik van Mulligen, Marc Weeber, Johan den Dunnen, Gert J van Ommen, Mark Musen, Matthew Cockerill, Henning Hermjakob, Albert Mons, Abel Packer, Roberto Pacheco, Suzanna Lewis, Alfred Berkeley, William Melton, Nickolas Barris, Jimmy Wales, Gerard Meijssen, Erik Moeller, Peter Roes, Katy Borner, Amos Bairoch
  • MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes
    Genome Res. (19 November 2007), gr.6743907.
    by Brandi L Cantarel, Ian Korf, Sofia M Robb, Genis Parra, Eric Ross, Barry Moore, Carson Holt, Sanchez, Mark Yandell
  • An overview of the wcd EST clustering tool
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. 1542-1546.
    by Scott Hazelhurst, Winston Hide, Zsuzsanna Liptak, Ramon Nogueira, Richard Starfield
    posted to est clustering assembly by jamselem on 2008-06-27 17:07:05 as **
  • Speciation in fungi.
    Fungal genetics and biology : FG & B, Vol. 45, No. 6. (June 2008), pp. 791-802.
    posted to fungi by jamselem on 2008-05-19 08:04:02 as **
  • Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)
    Nature Biotechnology, Vol. 26, No. 5. (04 May 2008), pp. 553-560.
    by Diego Martinez, Randy M Berka, Bernard Henrissat, Markku Saloheimo, Mikko Arvas, Scott E Baker, Jarod Chapman, Olga Chertkov, Pedro M Coutinho, Dan Cullen, Etienne GJ Danchin, Igor V Grigoriev, Paul Harris, Melissa Jackson, Christian P Kubicek, Cliff S Han, Isaac Ho, Luis F Larrondo, Alfredo L de Leon, Jon K Magnuson, Sandy Merino, Monica Misra, Beth Nelson, Nicholas Putnam, Barbara Robbertse, Asaf A Salamov, Monika Schmoll, Astrid Terry, Nina Thayer, Ann Westerholm-Parvinen, Conrad L Schoch, Jian Yao, Ravi Barbote, Mary A Nelson, Chris Detter, David Bruce, Cheryl R Kuske, Gary Xie, Paul Richardson, Daniel S Rokhsar, Susan M Lucas, Edward M Rubin, Nigel Dunn-Coleman, Michael Ward, Thomas S Brettin
    posted to genome fungi by jamselem on 2008-05-19 07:56:30 as **
  • Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus.
    PLoS genetics, Vol. 4, No. 4. (April 2008)
    by ND Fedorova, N Khaldi, VS Joardar, R Maiti, P Amedeo, MJ Anderson, J Crabtree, JC Silva, JH Badger, A Albarraq, S Angiuoli, H Bussey, P Bowyer, PJ Cotty, PS Dyer, A Egan, K Galens, CM Fraser-Liggett, BJ Haas, JM Inman, R Kent, S Lemieux, I Malavazi, J Orvis, T Roemer, CM Ronning, JP Sundaram, G Sutton, G Turner, JC Venter, OR White, BR Whitty, P Youngman, KH Wolfe, GH Goldman, JR Wortman, B Jiang, DW Denning, WC Nierman
    posted to genome fungi comparative_genomics by jamselem on 2008-05-19 07:51:54 as **
  • The minimum information about a genome sequence (MIGS) specification
    Nat Biotech, Vol. 26, No. 5. (May 2008), pp. 541-547.
    by Dawn Field, George Garrity, Tanya Gray, Norman Morrison, Jeremy Selengut, Peter Sterk, Tatiana Tatusova, Nicholas Thomson, Michael J Allen, Samuel V Angiuoli, Michael Ashburner, Nelson Axelrod, Sandra Baldauf, Stuart Ballard, Jeffrey Boore, Guy Cochrane, James Cole, Peter Dawyndt, Paul De Vos, Claude Depamphilis, Robert Edwards, Nadeem Faruque, Robert Feldman, Jack Gilbert, Paul Gilna, Frank O Glockner, Philip Goldstein, Robert Guralnick, Dan Haft, David Hancock, Henning Hermjakob, Christiane Hertz-Fowler, Phil Hugenholtz, Ian Joint, Leonid Kagan, Matthew Kane, Jessie Kennedy, George Kowalchuk, Renzo Kottmann, Eugene Kolker, Saul Kravitz, Nikos Kyrpides, Jim Leebens-Mack, Suzanna E Lewis, Kelvin Li, Allyson L Lister, Phillip Lord, Natalia Maltsev, Victor Markowitz, Jennifer Martiny, Barbara Methe, Ilene Mizrachi, Richard Moxon, Karen Nelson, Julian Parkhill, Lita Proctor, Owen White, Susanna-Assunta Sansone, Andrew Spiers, Robert Stevens, Paul Swift, Chris Taylor, Yoshio Tateno, Adrian Tett, Sarah Turner, David Ussery, Bob Vaughan, Naomi Ward, Trish Whetzel, Ingio San Gil, Gareth Wilson, Anil Wipat
    posted to genome by jamselem on 2008-05-19 07:46:32 as ** along with 5 people jfr tharris jyuh dullhunk neils
  • Repeat induced point mutation in two asexual fungi, Aspergillus niger and Penicillium chrysogenum
    Current Genetics, Vol. 53, No. 5. (May 2008), pp. 287-297.
    posted to rip fungi_te by jamselem on 2008-05-18 16:55:56 as **
  • miRNAminer: a tool for homologous microRNA gene search
    BMC Bioinformatics, Vol. 9, No. 39. (23 January 2008)
    by S Artzi, A Kiezun, N Shomron
    edited by C Bm
    posted to mirna_search by jamselem on 2008-05-18 16:36:05 as **
  • The genome sequence of the model ascomycete fungus Podospora anserina
    Genome Biology, Vol. 9 (06 May 2008), R77.
    by Eric Espagne, Olivier Lespinet, Fabienne Malagnac, Corinne Da Silva, Olivier Jaillon, Betina M Porcel, Arnaud Couloux, Jean-Marc Aury, Béatrice Ségurens, Julie Poulain, Véronique Anthouard, Sandrine Grossetete, Hamid Khalili, Evelyne Coppin, Michelle Déquard-Chablat, Marguerite Picard, Véronique Contamine, Sylvie Arnaise, Anne Bourdais, Véronique Berteaux-Lecellier, Daniel Gautheret, Ronald P de Vries, Evy Battaglia, Pedro M Coutinho, Etienne GJ Danchin, Bernard Henrissat, Riyad EL Khoury, Annie Sainsard-Chanet, Antoine Boivin, Bérangère Pinan-Lucarré, Carole H Sellem, Robert Debuchy, Patrick Wincker, Jean Weissenbach, Philippe Silar
  • A Chado case study: an ontology-based modular schema for representing genome-associated biological information
    Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i337-346.
    by Christopher J Mungall, David B Emmert, The F Consortium
    posted to bd by jamselem on 2008-05-17 18:13:06 as ** along with 1 person natstreet
  • The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis
    Nature, Vol. 452, No. 7183. (6 March 2008), pp. 88-92.
  • The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization.
    Science, Vol. 317, No. 5843. (7 September 2007), pp. 1400-1402.
    by CA Cuomo, U Güldener, JR Xu, F Trail, BG Turgeon, A Di Pietro, JD Walton, LJ Ma, SE Baker, M Rep, G Adam, J Antoniw, T Baldwin, S Calvo, YL Chang, D Decaprio, LR Gale, S Gnerre, RS Goswami, K Hammond-Kosack, LJ Harris, K Hilburn, JC Kennell, S Kroken, JK Magnuson, G Mannhaupt, E Mauceli, HW Mewes, R Mitterbauer, G Muehlbauer, M Münsterkötter, D Nelson, K O'donnell, T Ouellet, W Qi, H Quesneville, MI Roncero, KY Seong, IV Tetko, M Urban, C Waalwijk, TJ Ward, J Yao, BW Birren, HC Kistler
    posted to snp genome fungi_te fungi by jamselem on 2007-10-10 16:12:21 as ** along with 1 person alexl
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