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neils's protein-protein [44 articles]

Recent papers added to neils's library classified by the tag protein-protein. You can also see everyone's protein-protein.
  • iRefIndex: A consolidated protein interaction database with provenance
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Sabry Razick, George Magklaras, Ian Donaldson
    posted to protein-protein interaction database bioinformatics by neils on 2008-09-30 08:34:23 as **
  • Modifying the DPClus algorithm for identifying protein complexes based on new topological structures
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Min Li, Jianer Chen, Jianxin Wang, Bin Hu, Gang Chen
    posted to topology protein-protein prediction interaction complex bioinformatics by neils on 2008-09-25 02:20:03 as **
  • A combinatorial score to distinguish biological and nonbiological protein-protein interfaces
    Proteins: Structure, Function, and Bioinformatics, Vol. 64 (2006), pp. 68-78.
    by Shiyong Liu, Qingliang Li, Luhua Lai
    posted to protein-protein prediction interface interaction contact bioinformatics by neils on 2008-09-24 06:13:00 as **
  • Interspecies data mining to predict novel ING-protein interactions in human
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Paul Gordon, Mohamed Soliman, Pinaki Bose, Quang Trinh, Christoph Sensen, Karl Riabowol
    posted to protein-protein prediction interaction data-mining bioinformatics by neils on 2008-09-19 01:21:50 as **
  • Topology of small-world networks of protein-protein complex structures
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1311-1315.
    by A Del, Hirotomo Fujihashi, Paul O'Meara
    posted to topology protein-protein network complex bioinformatics analysis by neils on 2008-09-17 07:35:44 as **
  • The structural basis for an essential subunit interaction in influenza virus RNA polymerase
    Nature (27 July 2008)
    by Eiji Obayashi, Hisashi Yoshida, Fumihiro Kawai, Naoya Shibayama, Atsushi Kawaguchi, Kyosuke Nagata, Jeremy RH Tame, Sam-Yong Park
    posted to interaction polymerase protein-protein subunit virus by neils on 2008-08-28 00:47:44 as **
  • High-Quality Binary Protein Interaction Map of the Yeast Interactome Network
    Science (21 August 2008), 1158684.
    by Haiyuan Yu, Pascal Braun, Muhammed A Yildirim, Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amelie Dricot, Alexei Vazquez, Ryan R Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E Hudson, Juyong Park, Xiaofeng Xin, Michael E Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P Roth, Albert-Laszlo Barabasi, Jan Tavernier, David E Hill, Marc Vidal
    posted to binary interactome map network protein-protein yeast by neils on 2008-08-22 13:14:11 as ** along with 4 people grahamc yeastyboy jyuh maralena
  • notes Predicting PDZ domain-peptide interactions from primary sequences
    Nat Biotech, Vol. 26 (2008), pp. 1041-1045.
    by Jiunn R Chen, Bryan H Chang, John E Allen, Michael A Stiffler, Gavin Macbeath
    posted to bioinformatics domain interaction pdz peptide prediction protein-protein by neils on 2008-08-19 00:19:29 as **
  • Impacts of protein-protein interaction domains on organism and network complexity
    Genome Res., Vol. 18 (2008), pp. 1500-1508.
    by Kai Xia, Zheng Fu, Lei Hou, Jing
    posted to complexity domain interaction network protein-protein by neils on 2008-08-13 01:28:04 as **
  • An integrative approach for predicting interactions of protein regions
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i35-41.
    by Sven-Eric Schelhorn, Thomas Lengauer, Mario Albrecht
    posted to integration interaction prediction protein-protein by neils on 2008-08-11 00:36:09 as ** along with 2 people zwang kluck
  • An evaluation of human protein-protein interaction data in the public domain
    BMC Bioinformatics, Vol. 7, No. Suppl 5. (2006)
    by Suresh Mathivanan, Balamurugan Periaswamy, TKB Gandhi, Kumaran Kandasamy, Shubha Suresh, Riaz Mohmood, YL Ramachandra, Akhilesh Pandey
    posted to database human interaction protein-protein review by neils on 2008-08-06 05:27:51 as ** along with 7 people and 1 group frohike grahamc alwinpremanand lpfernandes hpaces zdai renatomilani Bioinformatics
  • Protein-Protein Interactions in the Membrane: Sequence, Structural, and Biological Motifs
    Structure, Vol. 16, No. 7. (9 July 2008), pp. 991-1001.
    by David T Moore, Bryan W Berger, William F Degrado
    posted to interaction membrane motifs protein-protein review by neils on 2008-07-10 04:36:45 as ** along with 2 people zwang jonsta247
  • InteroPorc: Automated Inference of Highly Conserved Protein Interaction Networks.
    Bioinformatics (Oxford, England) (28 May 2008)
    by Magali Michaut, Samuel Kerrien, Luisa Montecchi-Palazzi, Franck Chauvat, Corinne Cassier-Chauvat, Jean-Christophe C Aude, Pierre Legrain
    posted to bioinformatics interaction prediction protein-protein network by neils on 2008-07-07 14:13:12 as ** along with 4 people jyuh cabbagesofdoom renatomilani cerca
  • Contextual Specificity in Peptide-Mediated Protein Interactions
    PLoS ONE, Vol. 3, No. 7. (2 July 2008), e2524.
    by Amelie Stein, Patrick Aloy
    posted to binding context energy interaction peptide protein-protein specificity by neils on 2008-07-06 01:23:12 as ** along with 1 person zdai
  • Deducing topology of protein-protein interaction networks from experimentally measured sub-networks
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Ling Yang, Thomas Vondriska, Zhangang Han, Robb Maclellan, James Weiss, Zhilin Qu
    posted to bioinformatics interaction protein-protein topology network by neils on 2008-07-04 00:29:49 as ** along with 3 people dolchan renatomilani brianb
  • A General System for Studying Protein-Protein Interactions in Gram-Negative Bacteria
    J. Proteome Res. (1 July 2008)
    by Dale A Pelletier, Gregory B Hurst, Linda J Foote, Patricia K Lankford, Catherine K Mckeown, Tse-Yuan Lu, Denise D Schmoyer, Manesh B Shah, Judson W Hervey, Hayes W Mcdonald, Brian S Hooker, William R Cannon, Don S Daly, Jason M Gilmore, Steven H Wiley, Deanna L Auberry, Yisong Wang, Frank W Larimer, Stephen J Kennel, Mitchel J Doktycz, Jennifer L Morrell-Falvey, Elizabeth T Owens, Michelle V Buchanan
    posted to affinity bacteria interaction protein-protein tag by neils on 2008-07-01 13:24:33 as ** along with 2 people brianb jyuh
  • The topology of the bacterial co-conserved protein network and its implications for predicting protein function
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Anis K Fard, Sonia Leach, Lawrence Hunter, Ryan Gill
    posted to bacteria interaction network protein-protein topology by neils on 2008-07-01 00:32:28 as **
  • Co-Evolving Motions at Protein-Protein Interfaces of Two-Component Signaling Systems Identified by Covariance Analysis
    Biochemistry (28 June 2008)
    by Hendrik Szurmant, Benjamin G Bobay, Robert A White, Daniel M Sullivan, Richele J Thompson, Terence Hwa, James A Hoch, John Cavanagh
    posted to analysis covariance dynamics interaction nmr protein-protein two-component by neils on 2008-06-28 09:02:46 as ** along with 4 people raik marck paulschlesinger pansapiens
  • Global investigation of protein-protein interactions in yeast Saccharomyces cerevisiae using re-occurring short polypeptide sequences
    Nucl. Acids Res. (27 June 2008), gkn390.
    by S Pitre, C North, M Alamgir, M Jessulat, A Chan, X Luo, JR Green, M Dumontier, F Dehne, A Golshani
    posted to bioinformatics interaction prediction protein-protein yeast peptide by neils on 2008-06-28 03:28:18 as ** along with 4 people brianb pansapiens renatomilani jyuh
  • Protein complex identification by supervised graph local clustering
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i250-268.
    by Yanjun Qi, Fernanda Balem, Christos Faloutsos, Judith Klein-Seetharaman, Ziv Bar-Joseph
    posted to bioinformatics clustering graph interaction protein-protein complex by neils on 2008-06-28 01:53:59 as ** along with 1 person chad_davis
  • Assembly reflects evolution of protein complexes
    Nature (18 June 2008)
    by Emmanuel D Levy, Elisabetta B Erba, Carol V Robinson, Sarah A Teichmann
    posted to assembly evolution interaction protein-protein quaternary structure complex by neils on 2008-06-26 03:53:59 as ** along with 7 people psique marck paulschlesinger jwm zwang faion phoenixzxl
  • The Landscape of Human Proteins Interacting with Viruses and Other Pathogens
    PLoS Pathog, Vol. 4, No. 2. (Feb 2008)
    by Matthew D Dyer, Murali, Bruno W Sobral
    posted to bioinformatics database human interaction pathogen protein-protein virus by neils on 2008-06-18 13:51:04 as **
  • Inferring modules of functionally interacting proteins using the Bond Energy Algorithm.
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Ryosuke Watanabe, Enrique Morett, Edgar Vallejo
    posted to energy interaction prediction protein-protein algorithm by neils on 2008-06-18 00:57:15 as **
  • The Binary Protein Interactome of Treponema pallidum – The Syphilis Spirochete
    PLoS ONE, Vol. 3, No. 5. (May 2008)
    by Björn Titz, Seesandra V Rajagopala, Johannes Goll, Roman Häuser, Matthew T Mckevitt, Timothy Palzkill, Peter Uetz
    posted to binary interaction protein-protein spirochaete treponema by neils on 2008-05-31 13:44:36 as **
  • PIE: an online prediction system for protein-protein interactions from text
    Nucl. Acids Res. (28 May 2008), gkn281.
    by Sun Kim, Soo-Yong Shin, In-Hee Lee, Soo-Jin Kim, Ram Sriram, Byoung-Tak Zhang
    posted to bioinformatics interaction prediction protein-protein text-mining webserver by neils on 2008-05-29 03:02:27 as ** along with 3 people satre tharris jyuh
  • Prediction of enzyme function by combining sequence similarity and protein interactions
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Jordi Espadaler, Narayanan Eswar, Enric Querol, Francesc Aviles, Andrej Sali, Marc M Renom, Baldomero Oliva
    posted to bioinformatics enzyme function interaction prediction protein-protein sequence by neils on 2008-05-28 01:05:07 as ** along with 1 person and 1 group aprildh31 Proteasome
  • Evolution and dynamics of protein interactions and networks
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Emmanuel D Levy, Jose B Pereira-Leal
    posted to evolution interaction protein-protein review network by neils on 2008-05-15 07:54:50 as ** along with 5 people paolomarcatili jyuh cabbagesofdoom marck zdai
  • Estimating the size of the human interactome
    Proceedings of the National Academy of Sciences (12 May 2008), 0708078105.
    by Michael P Stumpf, Thomas Thorne, Eric de Silva, Ronald Stewart, Hyeong J An, Michael Lappe, Carsten Wiuf
    posted to bioinformatics human interaction interactome network prediction protein-protein by neils on 2008-05-14 04:39:31 as ** along with 21 people and 1 group tharris zwang chrissp100 sanchezbuelna jyuh phoenixzxl tmmurali paolomarcatili mjoach xingxu Ema cabbagesofdoom balicea marck friendpine brianb roys Evangelia dragonrez chad_davis bpcusack C. elegans / WormBase
  • Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Andrew Bordner, Andrey Gorin
    posted to bioinformatics interaction interface pdb protein-protein complex by neils on 2008-05-13 00:10:20 as ** along with 4 people chad_davis jyuh phoenixzxl bicko
  • An in Vivo Map of the Yeast Protein Interactome
    Science (8 May 2008), 1153878.
    by Kirill Tarassov, Vincent Messier, Christian R Landry, Stevo Radinovic, Mercedes M Molina, Igor Shames, Yelena Malitskaya, Jackie Vogel, Howard Bussey, Stephen W Michnick
    posted to interaction mapping protein-protein yeast complex by neils on 2008-05-13 00:02:02 as ** along with 7 people phoenixzxl cabbagesofdoom jyuh aubinhon brianb tmmurali grahamc
  • Functional Maps of Protein Complexes from Quantitative Genetic Interaction Data
    PLoS Comput Biol, Vol. 4, No. 4. (Apr 2008)
    by Sourav Bandyopadhyay, Ryan Kelley, Nevan J Krogan, Trey Ideker
    posted to bioinformatics interaction prediction protein-protein genetics complex network by neils on 2008-04-21 03:13:52 as **
  • Predicting Co-Complexed Protein Pairs from Heterogeneous Data
    PLoS Comput Biol, Vol. 4, No. 4. (Apr 2008)
    by Jian Qiu, William S Noble
    posted to bioinformatics interaction prediction protein-protein complex kernel by neils on 2008-04-21 03:12:15 as ** along with 1 person brianb
  • Analyzing Protein Interaction Networks Using Structural Information
    Annual Review of Biochemistry, Vol. 77, No. 1. (2008)
    by Christina Kiel, Pedro Beltrao, Luis Serrano
    posted to bioinformatics interaction network protein-protein structure by neils on 2008-04-11 01:44:07 as ** along with 8 people and 1 group chad_davis Borelli bicko Evangelia grahamc paolomarcatili phoenixzxl zwang structural_bioinformatics
  • Genome-Wide Prediction of SH2 Domain Targets Using Structural Information and the FoldX Algorithm
    PLoS Comput Biol, Vol. 4, No. 4. (Apr 2008)
    by Ignacio E Sánchez, Pedro Beltrao, Francois Stricher, Joost Schymkowitz, Jesper F Borg, Frederic Rousseau, Luis Serrano
    posted to bioinformatics interaction protein-protein sh2 specificity by neils on 2008-04-09 02:23:44 as **
  • Genome-wide inference of protein interaction sites: lessons from the yeast high-quality negative protein-protein interaction dataset.
    Nucleic Acids Res (14 February 2008)
    by Jie Guo, Xiaomei Wu, Da-Yong Y Zhang, Kui Lin
    posted to dataset genomics interaction negative protein-protein quality yeast by neils on 2008-04-04 00:20:29 as ** along with 4 people tmmurali kluck stef_lise paolomarcatili
  • Large-scale screening for novel low-affinity extracellular protein interactions
    Genome Res. (22 February 2008), gr.7187808.
    by Mark K Bushell, Christian Sollner, Benjamin Schuster-Boeckler, Alex Bateman, Gavin J Wright
    posted to avexis extracellular interaction protein-protein screen secretion by neils on 2008-04-02 02:27:27 as ** along with 9 people tmmurali Dualsystems grahamc zwang jyuh carlk niallhaslam kluck paolomarcatili
  • Intrinsically Disordered Proteins Display No Preference for Chaperone Binding In Vivo
    PLoS Comput Biol, Vol. 4, No. 3. (Mar 2008)
    by Hedi Hegyi, Peter Tompa
    posted to bioinformatics disorder interaction protein-protein chaperone by neils on 2008-03-13 04:46:07 as **
  • Evolution of protein domain promiscuity in eukaryotes
    Genome Res. (29 January 2008), gr.6943508.
    by Malay K Basu, Liran Carmel, Igor B Rogozin, Eugene V Koonin
    posted to domain evolution interaction protein-protein prokaryote by neils on 2008-02-29 23:20:27 as ** along with 6 people michC grahamc zwang carlk saket dchughes
  • A computational approach for detecting peptidases and their specific inhibitors at the genome level.
    BMC Bioinformatics, Vol. 8 Suppl 1 (2007)
    by L Bartoli, R Calabrese, P Fariselli, DG Mita, R Casadio
    posted to bioinformatics interaction peptidase prediction protein-protein inhibitor by neils on 2008-01-28 07:31:30 as ** along with 1 person zdai
  • Computational analysis and prediction of the binding motif and protein interacting partners of the Abl SH3 domain.
    PLoS Comput Biol, Vol. 2, No. 1. (January 2006)
    by T Hou, K Chen, WA McLaughlin, B Lu, W Wang
    posted to abl bioinformatics domain interaction prediction protein-protein sh3 by neils on 2008-01-24 08:10:57 as ** along with 4 people carlescorbi Evangelia biehl jteyra
  • Enhancing the prediction of protein pairings between interacting families using orthology information
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Jose Izarzugaza, David Juan, Carles Pons, Florencio Pazos, Alfonso Valencia
    posted to bioinformatics interaction orthology phylogeny prediction protein-protein by neils on 2008-01-24 02:01:55 as ** along with 1 person chad_davis
  • Protein interactions in human genetic diseases
    Genome Biology, Vol. 9, No. 1. (2008)
    by Benjamin S Bockler, Alex Bateman
    posted to bioinformatics disease interaction protein-protein by neils on 2008-01-17 01:57:31 as ** along with 10 people and 2 groups barry balicea frohike grahamc aconesa biomcgary barriot mingzhi mclarenv jyuh Bioinformatics McCammon
  • MODPROPEP: a program for knowledge-based modeling of protein-peptide complexes.
    Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007)
    by N Kumar, D Mohanty
    posted to binding mhc protein-protein software webserver kinase complex peptide by neils on 2008-01-16 02:50:32 as **
  • Protein-protein interaction networks and biology—what's the connection?
    Nature Biotechnology, Vol. 26, No. 1., pp. 69-72.
    by Luke Hakes, John W Pinney, David L Robertson, Simon C Lovell
    posted to editorial interaction protein-protein network by neils on 2008-01-12 03:27:37 as ** along with 15 people and 1 group Yanno jyuh tmmurali jfr balicea dullhunk mikaelhuss cjeans nedwards biehl shikin mclarenv Yumyai paolomarcatili zdai GeneGo
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