Coherent Coupling of Feedback Loops: A Design Principle of Cell Signaling Networks.

@article{citeulike:2966907, abstract = {MOTIVATION: It is widely accepted that cell signaling networks have been evolved to be robust against perturbations. To investigate the topological characteristics resulting in such robustness, we have examined large-scale signaling networks and found that a number of feedback loops are present mostly in coupled structures. In particular, the coupling was made in a coherent way implying that same types of feedback loops are interlinked together. RESULTS: We have investigated the role of such coherently coupled feedback loops through extensive Boolean network simulations and found that a high proportion of coherent couplings can enhance the robustness of a network against its state perturbations. Moreover, we found that the robustness achieved by coherently coupled feedback loops can be kept evolutionarily stable. All these results imply that the coherent coupling of feedback loops might be a design principle of cell signaling networks devised to achieve the robustness. CONTACT: ckh@kaist.ac.kr SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.}, address = {School of Computer Science and Information Technology, University of Ulsan, San 29, Mugeo 2-dong, Nam-gu, Ulsan 680-749, Republic of Korea.}, author = {Kwon, Yung-Keun K. and Cho, Kwang-Hyun H. }, citeulike-article-id = {2966907}, doi = {http://dx.doi.org/10.1093/bioinformatics/btn337}, issn = {1460-2059}, journal = {Bioinformatics (Oxford, England)}, month = {July}, posted-at = {2008-08-27 17:29:45}, priority = {2}, title = {Coherent Coupling of Feedback Loops: A Design Principle of Cell Signaling Networks.}, url = {http://dx.doi.org/10.1093/bioinformatics/btn337}, year = {2008} }

TY - JOUR ID - citeulike:2966907 L3 - citeulike-article-id:2966907 N2 - MOTIVATION: It is widely accepted that cell signaling networks have been evolved to be robust against perturbations. To investigate the topological characteristics resulting in such robustness, we have examined large-scale signaling networks and found that a number of feedback loops are present mostly in coupled structures. In particular, the coupling was made in a coherent way implying that same types of feedback loops are interlinked together. RESULTS: We have investigated the role of such coherently coupled feedback loops through extensive Boolean network simulations and found that a high proportion of coherent couplings can enhance the robustness of a network against its state perturbations. Moreover, we found that the robustness achieved by coherently coupled feedback loops can be kept evolutionarily stable. All these results imply that the coherent coupling of feedback loops might be a design principle of cell signaling networks devised to achieve the robustness. CONTACT: ckh@kaist.ac.kr SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. JF - Bioinformatics (Oxford, England) SN - 1460-2059 AD - School of Computer Science and Information Technology, University of Ulsan, San 29, Mugeo 2-dong, Nam-gu, Ulsan 680-749, Republic of Korea. TI - Coherent Coupling of Feedback Loops: A Design Principle of Cell Signaling Networks. AU - Kwon, Yung-Keun AU - Cho, Kwang-Hyun PY - 2008/07/02/ UR - http://dx.doi.org/10.1093/bioinformatics/btn337 ER -